Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 241 / 4e-75 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041204 [exp] 357 / 7e-123 AT3G22430 147 / 2e-40 unknown protein Lus10041205 [exp] 323 / 5e-109 AT3G22430 149 / 2e-40 unknown protein Lus10020567 [exp] 100 / 7e-23 AT3G22430 129 / 8e-33 unknown protein Lus10006278 [exp] 99 / 5e-22 AT3G22430 132 / 2e-32 unknown protein Lus10041203 [exp] 78 / 5e-17 AT3G22430 186 / 2e-57 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087400 [exp] 276 / 1e-88 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 255 / 1e-80 AT3G22430 409 / 2e-138 unknown protein Potri.009G147201 [exp] 114 / 2e-27 AT3G22430 148 / 3e-37 unknown protein Potri.008G024500 [exp] 96 / 3e-21 AT3G22430 127 / 1e-30 unknown protein Potri.010G235700 [exp] 94 / 2e-20 AT3G22430 125 / 4e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10021918 pacid=23157962 polypeptide=Lus10021918 locus=Lus10021918.g ID=Lus10021918.BGIv1.0 annot-version=v1.0 ATGGCTAGCAGCAGCTCCCAGCTCAAATCCTCTTCCTTCAAGCCTTCCTCCTCCGCTTCCGCGTCGCATCGCAAATCTCGTTGGGAATCCTCCTCTTCCG CCGCTAACGCCAATAATCAGCCGCCGGGATCGAAATCCAACCACACTAAGCCCACCAAACCTCATCCCAATTCAAAGCCCTCGCCCAAGCTCAATAAAGG GCCATCCCCTAAACCCGCCGCAGCTCCTGACGCCCTTGCTCCGCTGTCGGGTGCAGCGTTCCCGTTTCCCGATTTCGGTCCTCCTCCTACTCCCACCTAT GGCTTTCACATGCTGGAGAGGCGGTCCATCGTCCTAGCAGACGGCAGCGTTCGCTCCTACTTCGCTCTTCCTCCGGATTACCAGAACCTACCTCCTCCAC GTTTCATTCCCCCGGGTCATGTACCGTCCGGTGGAGGTATGAGGTTCCCGCCGATGAGTCCTGAAGGATTAGGGTTCCGTGATGGTAATCAAATTCGAGA TCAGAATCACGGAGCTGCTATGAAGCGGAAGCATCCTGGAGGAGTTGAGGAGGAGTTCAAGTACGGAAACAGCAACCCTTACGGATTTCACTCAGCTGGA GCCGGGCCGAGTAGCCCGTTTAGGAGAGGTGATGACTTGAGGCCAGGGAAGTATATGAGGATTGGTGGTGACAACGCGGGAGTGATCCATAAGCACCTTC AAGTTGACCCGAGCAAGCTAAAGAAAGCTTTTCTGCACTTTGCCAAGTTAATTAATGAGACTGAAGCTGAGAGACGGCGTTATTTAGAGAACGGCAAGCA TGCACGGCTACCTTGTGTCGCTTGTAACAGGTCGAAAGATTTTCCAGATGTTCATGCACTTATAATGCACACATACAACTCAGAAAATGCTGAATTTCTT GTGGACCACTTGGGTTTACACAAAGCCCTATGTGTTTTACTGGGATGGAACTTCATGAAGATACCTGATAGCTCAAGGGGGTACCAGTTCCTGCCTGCCG ATGAAGCAGCATCTAACCAGGATGATTTGATGATCTGGCCACCTGTGGTGATTATTCATAACACTGCTACAGGAAAGAGTAAGGAGGGACGCATAGAAGG TTTGGGAAACAAAGCTATGGATAGCAAAATAAGAGGTATAGCTCGCCCCTCCATTTAA
AA sequence Show only first row Show all	>Lus10021918 pacid=23157962 polypeptide=Lus10021918 locus=Lus10021918.g ID=Lus10021918.BGIv1.0 annot-version=v1.0 MASSSSQLKSSSFKPSSSASASHRKSRWESSSSAANANNQPPGSKSNHTKPTKPHPNSKPSPKLNKGPSPKPAAAPDALAPLSGAAFPFPDFGPPPTPTY GFHMLERRSIVLADGSVRSYFALPPDYQNLPPPRFIPPGHVPSGGGMRFPPMSPEGLGFRDGNQIRDQNHGAAMKRKHPGGVEEEFKYGNSNPYGFHSAG AGPSSPFRRGDDLRPGKYMRIGGDNAGVIHKHLQVDPSKLKKAFLHFAKLINETEAERRRYLENGKHARLPCVACNRSKDFPDVHALIMHTYNSENAEFL VDHLGLHKALCVLLGWNFMKIPDSSRGYQFLPADEAASNQDDLMIWPPVVIIHNTATGKSKEGRIEGLGNKAMDSKIRGIARPSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10021918 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	4.5	0.7675
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	6.2	0.7584
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	11.2	0.7073
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	12.4	0.7547
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	21.1	0.6864
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	23.9	0.6727
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	25.1	0.7228
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	27.0	0.6857
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	30.5	0.6779
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	30.9	0.7086

Compare expression of checked genes

Lus10021918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.