Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05370 514 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 464 / 2e-162 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75170 96 / 5e-22 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 92 / 8e-21 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 91 / 4e-20 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 76 / 4e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 74 / 2e-14 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 65 / 1e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55840 62 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 59 / 2e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041206 [exp] 808 / 0 AT1G05370 532 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10033464 [exp] 83 / 3e-17 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040252 [exp] 81 / 7e-17 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10020911 [exp] 82 / 9e-17 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 79 / 2e-16 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 77 / 6e-16 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 77 / 9e-16 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10010804 [exp] 74 / 1e-14 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 74 / 3e-14 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G088300 [exp] 646 / 0 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G152100 [exp] 640 / 0 AT1G05370 499 / 2e-176 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G068700 [exp] 90 / 1e-19 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 85 / 3e-18 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 84 / 2e-17 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G261000 [exp] 81 / 5e-17 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.003G162100 [exp] 80 / 9e-17 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 78 / 5e-16 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 76 / 5e-15 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G123200 [exp] 74 / 1e-14 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10021919 pacid=23158080 polypeptide=Lus10021919 locus=Lus10021919.g ID=Lus10021919.BGIv1.0 annot-version=v1.0 ATGGGCAAGCACCAGCCTAACCCGTCACCACCGCCACCTCAGACACCCTCCGGCGGCGCCGCCGGAGGAGGGAAAGTTGAAGCTGTTCTACAACTCCTAC GAAAGCAATCCCAGCTCACTCTCAAACAGGAGAAATACTGTAGCAAGAGCTGTGTGGAAAGGTTCCTCAGAGCCAAAGGGGATAATGTCAAGAAGGCTGC CAAGTCACTACGGGCTTGTCTTGCTTGGAGGGACTCCATCTCCATTGAGCATCTCATAGCAGACGAGTTTTCAGCTGAGCTGGCGGAAGGTGCTGCTTAC GTGGCCGGCCACGACGAGGAATCCAGACCCGTTGTGATGTTCCGCATTAAGCAGGACTACCACAAGTTCCGTTCCCAGAAAATATTCACTCGTTTCATGG CGTTCACTCTCGAGGTAGCAATTAGCAGCATGGCCAAGAACGCTGGACAATTTGTGCTCCTCTTTGACGCAAGCTTTTACAGATCAGGATCTGCTTTCAT GAATTTATTGCTCCCAACACTGAAAATTGTGGCCGAGTATTACCCCAGCAGGCTTCACTCTGCTTTTGTCATCGACCCACCTTCTCTTTTCTCTTACCTT TGGAAGGGCGTACGTCCATTTGTGGAGCTATCAACGGCCACAACAGTAGTATCCTCTCTGGACTTCGAAGAATCTCTCGAGTTTAACGACTTCACCTCCT ACCCTCGAGCTGCGTCCCTACGGTTCGATCCATCGTCAATCAAATCAACGGCCAAGATCAGCTCATGCGCCTCCTCTCGCTTTTCCTTCACCGTGTCCCA CCATTTTGACTCCGTCAAGCCTTGGTATCTCTCTCTAGGCGACACGTCAACTGCCAAAGTTGGCCCCACTAGCAAATTAGACAGCCACTCGTCGTCGTCG TTGGGACCCGCGTTGATCTCCCAGCTTAACGCCCGGTCCTACTCGTTTGCGTCGCCTATTGCCCGGACGCCGCCGGGGAGCATTGGCGGCAGCAACCACT ATGGTTACTCCGGCGCCGCTTCCCGGACAGCGAAGAAAGGGTTCTTCCCTTCGACGCCGATGCCGCAGCGGGTCACCAGCGCTGCCGACGCCGTGAAGGT CTGTCATCCGCGGACCCCACGCCCTTCGTTCCTACAGTCGCCGGCGTTGTTCTTCAAGAGGGACTGCCACGTCAGCGGAGGCAACAAGGCCGAGCGGTCC AGGGAATCGTTCCTCCCGTTTTTGAAGTTCTATAGAAGGCCGTACGACGAGATGGTTTACAGGTCAAAGATGCGGCCACCGCTCGGTGGACTGATCTCAA TTGTCTCCCCGCAAATTAGGAGGCGGCACGTGTCGGTATCCCAACGGTTTTAG
AA sequence Show only first row Show all	>Lus10021919 pacid=23158080 polypeptide=Lus10021919 locus=Lus10021919.g ID=Lus10021919.BGIv1.0 annot-version=v1.0 MGKHQPNPSPPPPQTPSGGAAGGGKVEAVLQLLRKQSQLTLKQEKYCSKSCVERFLRAKGDNVKKAAKSLRACLAWRDSISIEHLIADEFSAELAEGAAY VAGHDEESRPVVMFRIKQDYHKFRSQKIFTRFMAFTLEVAISSMAKNAGQFVLLFDASFYRSGSAFMNLLLPTLKIVAEYYPSRLHSAFVIDPPSLFSYL WKGVRPFVELSTATTVVSSLDFEESLEFNDFTSYPRAASLRFDPSSIKSTAKISSCASSRFSFTVSHHFDSVKPWYLSLGDTSTAKVGPTSKLDSHSSSS LGPALISQLNARSYSFASPIARTPPGSIGGSNHYGYSGAASRTAKKGFFPSTPMPQRVTSAADAVKVCHPRTPRPSFLQSPALFFKRDCHVSGGNKAERS RESFLPFLKFYRRPYDEMVYRSKMRPPLGGLISIVSPQIRRRHVSVSQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	0	1
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	7.5	0.6999
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	7.9	0.7240
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	10.0	0.6875
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	14.1	0.6872
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	19.6	0.6216
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	20.6	0.6907
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	23.5	0.6884
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	26.2	0.6346
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	27.4	0.6727
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	29.0	0.6777

Compare expression of checked genes

Lus10021919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.