Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32120 832 / 0 HSP70T-2 heat-shock protein 70T-2 (.1.2) AT3G12580 302 / 3e-94 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 301 / 8e-94 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 300 / 1e-93 HSP70B heat shock protein 70B (.1) AT1G56410 292 / 5e-91 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 292 / 1e-90 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 286 / 4e-88 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 262 / 5e-79 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 259 / 4e-78 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 258 / 2e-77 BIP1 heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041207 [exp] 1111 / 0 AT2G32120 845 / 0.0 heat-shock protein 70T-2 (.1.2) Lus10002319 [exp] 305 / 2e-95 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 303 / 1e-94 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 286 / 2e-88 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 283 / 3e-87 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 287 / 1e-86 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10017306 [exp] 267 / 3e-80 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 259 / 2e-79 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 259 / 5e-78 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152000 [exp] 931 / 0 AT2G32120 899 / 0.0 heat-shock protein 70T-2 (.1.2) Potri.010G088600 [exp] 919 / 0 AT2G32120 901 / 0.0 heat-shock protein 70T-2 (.1.2) Potri.001G042600 [exp] 300 / 1e-93 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 299 / 3e-93 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 298 / 7e-93 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 298 / 9e-93 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 296 / 5e-92 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 294 / 3e-91 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 292 / 2e-90 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 273 / 3e-83 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10021920 pacid=23157971 polypeptide=Lus10021920 locus=Lus10021920.g ID=Lus10021920.BGIv1.0 annot-version=v1.0 ATGGCCGAACCCCAACCCCAATACACAGTGGCATCCGACAGCGAAACAACTGGAGAGGAGAAATCATCGGTAGCCTTTCCAGAGAGTGCGATCGGAATAG ATATTGGGACCTCACAATGCAGCATTGCAGTATGGAACGGTTCCCAGATAGACCTCCTTAAGAACACTAGAAATCAGACGCTGATGCGATCATACGTCAC TTTCAAGGACGATACCCCTTCTGCTGGTGTCAGCAACCAGCTCTCCCATGAGCGTGAAGTCTTATCCGGAGCTGCAATATTCAACATGAAACGCCTCATA GGCAGGGTTGACACCGACCCTGTGGTTATTTCGGCGAACAAGTCCCTTCCTTTCATGGTGCAGACGTTGGGAATCGGAGTTCGTCCGCTCATTGCAGCTC TGGTTAACAATGCTTGGAGGTCCACCACCCCTGAAGAAGTTCTTGCAATATTCCTTGTGGAACTAAGAGCCATGGCCGAGGTTCAACTCAAGAGGCCTAT TAGGAACGTTGTCCTGACTGTTCCGGCTTCGTTTAGTAGGTTTCAGATGACGAGAATCGAGCGAGCTTGTGCGATGGCCGGGCTTCATGTTCTGAGACTG ATGCCTGAACCAACAGCTGTTGCGTTGTTATATGCACAGCACCAGCAACAGATTGTTCATGAGAATATGGGAAGTGGTAGCGAGAAGAATGCTCTGATAT TAAACTTTGGTGCTGGATATTGTGATGTTGCTGTCACTGCTACCGCAGGTGGAGTTTCTCAGATTAGGGCTCTAGTAGGAGCTGCTGTTGGTGGAGAAGA CATGCTTCAGAATTTGATGAGGTATCTCTTCCCTGAAGCTGACATCTTTTTCTCGAAGAAATCGGTCGATGCTATTAAGTCCATGGCATTATTACGGATC GCAACTGAAGATGCCATCCATAAGCTTTCCTCCCAAACCAGCGTTCAGGTGGATGTTGATTTGGGAAATGATATAAAAATCTGTAAAGTTCTCGACAGGA AGGAGTTTGAGGAAGTGAACAAAGAGGTTTTTGCCAAGTGCAAGAGCCTCGTTACGCAATGCCTTCACGACTCGAAGGTGGATATCAAGGATCTGAATGA CGTTATACTCGTTGGTGGATGTTCCTGCATTCCAAAGGTTCGGAGCCTTGTTAAGACTATTTGTAAAAGGGAGGAGCTTTACGAGGGAATCGATCCGTTG AAGGCTGCAGTTAGTGGAGCGGCACTAGAGGGTGCAATTGCTTCAGGAATCAGCGATCCCTTTGGATGTTTGGACCTTCTAACAATCCAATCCACTCCAC TGGCATTGGGAATAAGAGCTGATGGTAACGGATTTTCCCAAATCATACCTAAGAACACTACCATGCCTGCACGGAAGGAACAGGTTTTCACGACCTCTGT TGATAACCAGACGGAAGCACTTGTTATTGTCTATGAAGGTGAAGGGAAAAGCATGGAAGAGAATCATATTTTGGGCTTTTTCAAGATTACTGGGATCCCA TCGGCGCCTAAAGGAGCTTCGGAGATAATAATCTCCATGGACATTGATGCTGGGAATGTACTGAGAGTGTTTTCTTGGGTGATGATGCCTGGAAATGAGC ATCCTGTAACTCCTTTCACGGAAGTTCGGATGCCAACAGTTGACGATGGGCACGGTTGGTGCGGGGAAGCCTTGCAGACGGCTTATGGGTCTGCATTAGA GCTGGTTACTGTCCAAAAAAATATGTAA
AA sequence Show only first row Show all	>Lus10021920 pacid=23157971 polypeptide=Lus10021920 locus=Lus10021920.g ID=Lus10021920.BGIv1.0 annot-version=v1.0 MAEPQPQYTVASDSETTGEEKSSVAFPESAIGIDIGTSQCSIAVWNGSQIDLLKNTRNQTLMRSYVTFKDDTPSAGVSNQLSHEREVLSGAAIFNMKRLI GRVDTDPVVISANKSLPFMVQTLGIGVRPLIAALVNNAWRSTTPEEVLAIFLVELRAMAEVQLKRPIRNVVLTVPASFSRFQMTRIERACAMAGLHVLRL MPEPTAVALLYAQHQQQIVHENMGSGSEKNALILNFGAGYCDVAVTATAGGVSQIRALVGAAVGGEDMLQNLMRYLFPEADIFFSKKSVDAIKSMALLRI ATEDAIHKLSSQTSVQVDVDLGNDIKICKVLDRKEFEEVNKEVFAKCKSLVTQCLHDSKVDIKDLNDVILVGGCSCIPKVRSLVKTICKREELYEGIDPL KAAVSGAALEGAIASGISDPFGCLDLLTIQSTPLALGIRADGNGFSQIIPKNTTMPARKEQVFTTSVDNQTEALVIVYEGEGKSMEENHILGFFKITGIP SAPKGASEIIISMDIDAGNVLRVFSWVMMPGNEHPVTPFTEVRMPTVDDGHGWCGEALQTAYGSALELVTVQKNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	0	1
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	1.0	0.9231
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10020345 [exp]	2.8	0.9061
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	3.0	0.9038
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	4.0	0.9016
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	4.5	0.8961
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	5.7	0.8823
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	8.1	0.8801
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	8.5	0.8854
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	11.2	0.8689
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	11.4	0.8810

Compare expression of checked genes

Lus10021920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.