Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021921 pacid=23158051 polypeptide=Lus10021921 locus=Lus10021921.g ID=Lus10021921.BGIv1.0 annot-version=v1.0 ATGGCTGGTAGATTTAGAAGAACGATTCTGGGTTACAGGAGCATGATCATCTTGGTCCTAGCATTTGCATTTCTGTCCGGGTCGTCTAATTTGACTGCGG GACATGCTGTTAGTTTTCCAGAATCCAGGGAAGAAGCAAAGATCAGTTGTGGAGAAAAGGAGACCCAGAAGTTGCATCATGTTTCCAAAGGTGGTGTACG CGGGAGTAGTTCAGGGCAAGGTGGGCATGGACATCACTGA
AA sequence Show only first row Show all	>Lus10021921 pacid=23158051 polypeptide=Lus10021921 locus=Lus10021921.g ID=Lus10021921.BGIv1.0 annot-version=v1.0 MAGRFRRTILGYRSMIILVLAFAFLSGSSNLTAGHAVSFPESREEAKISCGEKETQKLHHVSKGGVRGSSSGQGGHGHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021921 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	9.0	0.8050
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	17.1	0.8137
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	18.0	0.7754
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	18.2	0.7575
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	25.7	0.6900
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	46.2	0.7405
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	48.8	0.7203
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	52.4	0.7800
AT4G34880			Amidase family protein (.1)		Lus10027852 [exp]	79.0	0.7546
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	95.0	0.7188

Compare expression of checked genes

Lus10021921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.