Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14940 816 / 0 ATAO1 amine oxidase 1 (.1) AT1G31690 653 / 0 Copper amine oxidase family protein (.1) AT1G31710 636 / 0 Copper amine oxidase family protein (.1) AT1G31670 622 / 0 Copper amine oxidase family protein (.1) AT1G62810 546 / 0 Copper amine oxidase family protein (.1) AT4G12290 546 / 0 Copper amine oxidase family protein (.1) AT3G43670 532 / 0 Copper amine oxidase family protein (.1) AT4G12280 288 / 3e-92 copper amine oxidase family protein (.1) AT4G12270 262 / 3e-80 Copper amine oxidase family protein (.1) AT2G42490 222 / 2e-62 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010540 [exp] 627 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 626 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 624 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 613 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 546 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 538 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 503 / 5e-170 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10041208 [exp] 472 / 2e-161 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1) Lus10013356 [exp] 446 / 3e-152 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G088900 [exp] 944 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.010G088800 [exp] 675 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 673 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 664 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 587 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 531 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 219 / 9e-62 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 214 / 9e-60 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 214 / 1e-59 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10021922 pacid=23157967 polypeptide=Lus10021922 locus=Lus10021922.g ID=Lus10021922.BGIv1.0 annot-version=v1.0 ATGGATAATCCTCTGTTCCAAGTTGTAGCTTTAGCTATTCTCCTCTCTTGTTCCTTCCCACTTAGCCTTTCTCACCCTCTCGACCCTCTCAGCCTAACTG AAATCAACCAAGTGAGATTCATCGTCCTAAATTCTAGCCTCGGCAATCTCCCTAATCTCACTTTCCACATCGTCGAACTTGTTGAACCCGACAAATCCGA TGTCATCATCTGGCTCGACTCTCGCCATTCCTCGACATCATCAAAATTTACTACTCCTCCACCACCTCGCCAAGCCAAGGTCGTGGTTCGGGCTGACCAC AAGACTCACGAGCTCATAGTCGACTTCACCACACACTCTGTCGTGTCGAACCACGTCTACACCGGCCATGGCTATCCTCCTCTGTCATTCCAGGAGTTGT TCCAGGCAAGCAAACTTCCCTTGAAAGATCCAAAGTTCACGAACTCGATAAAATCCAGGGGATTGAACATATCAGAAGTGTCCTGCATTCCAATGACAGC CGGATGGTACGGCGAAATCGTGACAACCCGTATACTCCGAATCAACTGCTTCTACAGAGGAGCATCCGTGAACGTATTCGCTAGGCCTATCGAAGGAATC AACATACTCGTGGACGTCGAGTCGATGACCATCACAAGCTACACCGACAGGTTCAGAGCTCCCCTGCCCAAATCCGAAGGCACCGATTTCCGCTCACACA ACAACAACATCTCCACAAATTCCATCGTCTACAACATTTCCGGCCCGGGCTTCAAGATCGAAAACGGCCACGTGGTGAAATGGTCTAACTGGGAATTCCA TCTGTCGTTTGATGCACGAGCCGGTGTCACGATATCCACGGCTTCAGTATTCGACCCGAAGAGAAAGAAATTCCGGCGTGTTATGTACAGAGGTCACGTG TCGGAGACGTTTGTGCCGTACATGGATCCGAGTAATGAATGGTACTACAGGACTTTCATGGATATAGGCGAGTTTGGGTTCGGGAGGAGCGCTGATTCGC TGCAATTGAAGATCGATTGCCCTGCGAATGCGGTGTATTTGGACGGGTATGTTGCTGGAGGAGATGGGAAGGCGCAGAAGATGGGGAATGTGATTTGTGT ATTTGAGAGGTATAGTGGGAATGTTGGTTTGAGACATTCGGAGATTAATGTACCTGGAAGAGTGATCAGAAGTGGTGAACCTGAGATTAGCTTGGTTGTC AGGATGGTGGCTACTGTAGGAAATTATGATTACATTCTCGACTGGGAGTTCAAGGAAAGCGGCTCTATCAAAGTTGGGGTTGACCTGACAGGAATCGTGG AGGTTAAGGCCACCGAACAGATCTACACAAACGGGACCGGAGAAAATGTATACGGCACCCTGGTGACGGAGAATGCCGTTGCGATTAACCACGACCATTA CTTGACATACTATCTCGACCTAGACGTTGACGGCAAACAAAACTCATTCGTAAAAGCAAAGCTACAAACAGCGAGAGTTTCGCCGGTCAGCGGGGCTTCC CCGAGGAGAAGCTACTGGACGGTCGTTAAGGAGACCGTGAAAACCGAAGCAGATGCGAGAGTTCGGCTCGGTTTCGAGCCGGAGGAATTGCTTATTGTGA ACCCGAATAAACGAACCAGACTTGGGAACCAAGTGGGCTACCGGCTGATCACGGGTCAGCCGGTTAATTCTTTGTTGAGTGATTATGATTATCCGCAGAT TAGAGCCGGGTACACCAAGTATCAGGTGTGGGTTATCGGTTTGGAGACCGCTTATAACAAGTCGGAGAGGTGGGCGGGCGGGTACTATGCGGATCGGAGC AGAGGTGAAGACGGGTTATCGGTTTGGACCCGGAAAAACAGAGGGATTGAGAACAGAGATATCGTTGTGTGGTACACTGTTGGGTTCCATCATAATCCCT GCCAGGAAGATTTCCCCATAATGTCGACGATTCATGACGGGTTTGAGCTCCGACCCGCTAATTTCTATGAAAGCAACCCGGTGGTCAACTAA
AA sequence Show only first row Show all	>Lus10021922 pacid=23157967 polypeptide=Lus10021922 locus=Lus10021922.g ID=Lus10021922.BGIv1.0 annot-version=v1.0 MDNPLFQVVALAILLSCSFPLSLSHPLDPLSLTEINQVRFIVLNSSLGNLPNLTFHIVELVEPDKSDVIIWLDSRHSSTSSKFTTPPPPRQAKVVVRADH KTHELIVDFTTHSVVSNHVYTGHGYPPLSFQELFQASKLPLKDPKFTNSIKSRGLNISEVSCIPMTAGWYGEIVTTRILRINCFYRGASVNVFARPIEGI NILVDVESMTITSYTDRFRAPLPKSEGTDFRSHNNNISTNSIVYNISGPGFKIENGHVVKWSNWEFHLSFDARAGVTISTASVFDPKRKKFRRVMYRGHV SETFVPYMDPSNEWYYRTFMDIGEFGFGRSADSLQLKIDCPANAVYLDGYVAGGDGKAQKMGNVICVFERYSGNVGLRHSEINVPGRVIRSGEPEISLVV RMVATVGNYDYILDWEFKESGSIKVGVDLTGIVEVKATEQIYTNGTGENVYGTLVTENAVAINHDHYLTYYLDLDVDGKQNSFVKAKLQTARVSPVSGAS PRRSYWTVVKETVKTEADARVRLGFEPEELLIVNPNKRTRLGNQVGYRLITGQPVNSLLSDYDYPQIRAGYTKYQVWVIGLETAYNKSERWAGGYYADRS RGEDGLSVWTRKNRGIENRDIVVWYTVGFHHNPCQEDFPIMSTIHDGFELRPANFYESNPVVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	0	1
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	3.3	0.9740
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	4.9	0.9673
AT1G75050			Pathogenesis-related thaumatin...		Lus10018804 [exp]	5.1	0.9363
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	6.2	0.9721
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	7.4	0.9631
					Lus10007415 [exp]	8.2	0.9633
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	9.8	0.9631
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	11.8	0.9516
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	13.1	0.9531
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	13.7	0.9506

Compare expression of checked genes

Lus10021922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.