Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02770 293 / 5e-102 PSAD-1 photosystem I subunit D-1 (.1) AT1G03130 290 / 1e-100 PSAD-2 photosystem I subunit D-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041209 [exp] 377 / 7e-135 AT1G03130 306 / 5e-107 photosystem I subunit D-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151600 [exp] 309 / 4e-108 AT1G03130 300 / 8e-105 photosystem I subunit D-2 (.1) Potri.010G089400 [exp] 308 / 5e-108 AT1G03130 289 / 1e-100 photosystem I subunit D-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02531 [flax] [poplar] PsaD PsaD
Representative CDS sequence Show only first row Show all	>Lus10021923 pacid=23158056 polypeptide=Lus10021923 locus=Lus10021923.g ID=Lus10021923.BGIv1.0 annot-version=v1.0 ATGGCAGCCATGGCAACACAATCCACTCTCTTCACTCCTCCATCTCTCAAACCCACTTCCCTCTCCCGCAACACAAAATCATCCTTCGTCTCAATCCCCA CCTCCCTCACCAAACTTTCTCACGCCAAAACCGCCATCGTCAGGGCCGCCGCACCAGAGGGAAGCGCCGCCCCGGAGGCGCCACCAAAAAAGGAAGCGCC TGTCGGATTCACCCCGCCGGAGCTGGACCCCAGCACCCCATCCCCTATCTTCGGCGGGAGCACCGGCGGGCTTCTGAGGAAAGCCCAAGTGGAGGAATTC TACGTCATAACCTGGGAGTCCCCTAAAGAGCAGATCTTCGAGATGCCCACCGGCGGAGCTGCGATCATGAGGGAAGGTCCCAACCTGCTGAAGCTGGCCA GGAAAGAGCAATGCTTGGCCTTGGGGACTAGGTTGAGGTCCAAATACAAGATCAAGTACCAGTTTTACAGGGTGTTCCCCAACGGGGAGGTTCAGTATTT GCATCCCAAAGATGGAGTTTACCCTGAGAAGGTTAACCCTGGTAGGGAAGGAGTCGGGCAGAACTTTAGGTCCATTGGTAAGAATGTTAGCCCTATTGAG GTCAAGTTTACCGGGAAGCAGACATATGATTTGTGA
AA sequence Show only first row Show all	>Lus10021923 pacid=23158056 polypeptide=Lus10021923 locus=Lus10021923.g ID=Lus10021923.BGIv1.0 annot-version=v1.0 MAAMATQSTLFTPPSLKPTSLSRNTKSSFVSIPTSLTKLSHAKTAIVRAAAPEGSAAPEAPPKKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEF YVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIE VKFTGKQTYDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	0	1
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	1.0	0.9890
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10023509 [exp]	2.0	0.9656
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	2.4	0.9639
AT4G14615			unknown protein		Lus10006639 [exp]	4.2	0.9475
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	4.5	0.9561
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	5.0	0.9523
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	6.3	0.9369
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	7.6	0.9154
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	8.1	0.9360
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	8.7	0.9258

Compare expression of checked genes

Lus10021923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.