Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26340 817 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 597 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 556 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G11260 555 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 551 / 0 Major facilitator superfamily protein (.1) AT5G26250 551 / 0 Major facilitator superfamily protein (.1) AT1G50310 550 / 0 ATSTP9 sugar transporter 9 (.1) AT3G05960 548 / 0 ATSTP6 sugar transporter 6 (.1) AT5G23270 531 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 526 / 0 STP12 sugar transporter protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010534 [exp] 821 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 820 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 559 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002452 [exp] 544 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 543 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10018422 [exp] 541 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10005870 [exp] 535 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10002597 [exp] 523 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10021926 [exp] 517 / 2e-180 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151100 [exp] 781 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 761 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 591 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 580 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.001G248900 [exp] 578 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 572 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 572 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 570 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 568 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.010G090000 [exp] 565 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10021924 pacid=23157990 polypeptide=Lus10021924 locus=Lus10021924.g ID=Lus10021924.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGAGGAGTCAGAACATCCGCTGCCAGTCAAGGCGTTGAGTTCGAGGCCAAGATTACTTCCATCGTTATCATCTCCTGTATTATGGCGGCCA CCGGCGGCCTCATGTTTGGCTACGATGTTGGCATCTCAGGGGGGGTGACGTCGATGCAGCCATTTCTGAAGAAGTTTTTCCCCGTGGTGTACAATAAGAC GATGCCCCAGGAATCCGACACTCCGAAGAAGGAGAGCAACTACTGCAAGTACGATAACCAAGGCTTGCAGTGGTTCACTTCGTCCCTCTACTTGGCCGGG CTCACCGCTACGTTCTTCGCGTCCGTTACTACGAGGAAGTTCGGAAGGCGTCCGACCATGTTGATCGCCGGATTGTTGTTCATCGTCGGCGTGGTGCTTA ATGCCGCAGCTCAGAACCTCGCCATGCTCATCATCGGCAGGATCTTACTTGGCTGTGGCGTTGGCTTCGCTAATCAGGCAGTGCCACTGTTTTTATCAGA AATAGCTCCGACCAAAATTCGTGGGGCTCTAAACATATTGTTTCAGTTCAATGTCACCATTGGCATTCTCTTGGCCAACTTGATCAACTACCGCACTGCC AAGATCAAAGCTGGATGGGGATGGAGACTGTCGCTAGGACTAGCAGGAGTGCCAGCATTACTCCTAACAGTCGGAGCACTCCTCGTATCCGAAACCCCAA ACAGCCTCATCGAACGAGGTCGTTTAGACGAAGGCAAAGCCGTCCTCAAAAGGATAAGGGGGACGGACATGATTGAGCCAGAATTCTTGGAGCTAGTGGA GGCCAGCCGCATCGCCAAACAAGTCAAACACCCTTTTAGGGACCTCTTTCAGCGCCGCCAAAACCGCCCGCAACTAATCATAGCCGTCGCCTTACAGATC TTCCAACAATGCACCGGGATCAACTCGATCATGTTCTACGCGCCTGCCCTATTCAATACGCTAGGATTCGGAAGCGACGCCGCTCTGTATTCGGCAGTCA TCACAGGGGCGGTCAACGTCCTCTCCACGGTCGTCTCCATCTACTCGGTGGACAAGCTGGGCCGTCGGATGCTTCTCCTCGAAGCAGGGGTCCAGATGTT TCTTGCACAGGTGATAATTGCAGCGGTGCTGGGGGTCAAAATGACCGAATACGAAAGGCTCGACAAAGGGCTCGCCATCCTGGTGGTGGTGATGGTGTGC ACTTTCGTGTCGGCGTTTGCGTGGTCGTGGGGCCCGCTGGCTTGGCTGATCCCTAGCGAGACATTCCGGCTGGAGACACGGTCAGCGGGGCAGAGCGTGA CCGTTTGCGTCAACTTTCTGTTCACCTTCATCATAGCTCAGTCGTTTCTTTCGATGCTGTGTCACTTCAAGTTCGGGATTTTCATCTTCTTCTCCGGGTG GGTGGCGGCGATGTCGGTTTTTGTGGTGGTTTTGGTCCCCGAAACGAAGAATGTTCCGATAGAGGAGATGACTGAGATGGTTTGGCGTCGACATTGGTTT TGGAAGAGGTTTATGGTGGGAGATGGTAGTACTGGTGGTGGGGATGGGGTAGCTGCTGCTGAGATGGACGAGAGGGTTCCGAGTGGTGGGCGTTCGAAGA TTAATGGTACTGTTGGGGTTGAATATTAA
AA sequence Show only first row Show all	>Lus10021924 pacid=23157990 polypeptide=Lus10021924 locus=Lus10021924.g ID=Lus10021924.BGIv1.0 annot-version=v1.0 MAGGGVRTSAASQGVEFEAKITSIVIISCIMAATGGLMFGYDVGISGGVTSMQPFLKKFFPVVYNKTMPQESDTPKKESNYCKYDNQGLQWFTSSLYLAG LTATFFASVTTRKFGRRPTMLIAGLLFIVGVVLNAAAQNLAMLIIGRILLGCGVGFANQAVPLFLSEIAPTKIRGALNILFQFNVTIGILLANLINYRTA KIKAGWGWRLSLGLAGVPALLLTVGALLVSETPNSLIERGRLDEGKAVLKRIRGTDMIEPEFLELVEASRIAKQVKHPFRDLFQRRQNRPQLIIAVALQI FQQCTGINSIMFYAPALFNTLGFGSDAALYSAVITGAVNVLSTVVSIYSVDKLGRRMLLLEAGVQMFLAQVIIAAVLGVKMTEYERLDKGLAILVVVMVC TFVSAFAWSWGPLAWLIPSETFRLETRSAGQSVTVCVNFLFTFIIAQSFLSMLCHFKFGIFIFFSGWVAAMSVFVVVLVPETKNVPIEEMTEMVWRRHWF WKRFMVGDGSTGGGDGVAAAEMDERVPSGGRSKINGTVGVEY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	3.6	0.9162
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	4.7	0.8988
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	5.0	0.8896
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010337 [exp]	5.3	0.8145
AT5G19340			unknown protein		Lus10010529 [exp]	5.5	0.8683
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	7.1	0.8977
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	8.8	0.8591
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	9.4	0.8953
					Lus10002396 [exp]	10.8	0.7499
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	11.5	0.8888

Compare expression of checked genes

Lus10021924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.