Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26250 601 / 0 Major facilitator superfamily protein (.1) AT3G05960 587 / 0 ATSTP6 sugar transporter 6 (.1) AT5G26340 509 / 7e-178 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G07340 493 / 7e-172 ATSTP2 sugar transporter 2 (.1) AT1G50310 468 / 1e-161 ATSTP9 sugar transporter 9 (.1) AT3G19940 458 / 6e-158 Major facilitator superfamily protein (.1) AT4G02050 457 / 1e-157 STP7 sugar transporter protein 7 (.1) AT4G21480 446 / 2e-153 STP12 sugar transporter protein 12 (.1) AT1G77210 439 / 1e-150 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G23270 438 / 6e-150 ATSTP11, STP11 sugar transporter 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002452 [exp] 732 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10010532 [exp] 677 / 0 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10005870 [exp] 529 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10002450 [exp] 511 / 2e-178 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 510 / 6e-178 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 491 / 2e-170 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 444 / 2e-152 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 436 / 5e-149 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10041212 [exp] 414 / 3e-144 AT5G26250 319 / 3e-107 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090000 [exp] 694 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150800 [exp] 604 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.008G150700 [exp] 604 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 564 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042900 [exp] 525 / 0 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 499 / 5e-174 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 491 / 2e-170 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 461 / 9e-159 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.007G072800 [exp] 456 / 3e-157 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 451 / 5e-155 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10021926 pacid=23158067 polypeptide=Lus10021926 locus=Lus10021926.g ID=Lus10021926.BGIv1.0 annot-version=v1.0 ATGGAGGATTATGAGAAACCCAGCCCAGACTATTTCCCATCCAAGCTTACTATCTATGTCGTCATCTGTTACATCCTCGCCGCCTTCGGTGGCTTAATGT TTGGCTACGACATCGGCATCTCTGGTGGAGTGACGGCGATGGACGACTTTCTGATAAAGTTCTTCCCGAAAGTATATGAAAAGAAGCTACACGTAAAAGA AGACAACTACTGTAAATACGACGACCAAAACCTCCAGCTATTCACATCGTCCTTGTACCTGGCGGCCTTGGTCTCCAGCTTCGCAGCCTCTAAGGCTTGT GACAAATTGGGCCGAAAGCCAACCATACTTGTGGCCTCATTGTTCTTCCTAGGTGGAACCGCCCTTAGTGCCGGAGCTATTAACATGGTCATGCTCATTT TCGGCAGAGTCCTCCTCGGCATCGGTGTCGGTTTCGGTAATGAGTCGGTTCCCCTGTTCTTGTCGGAGATTGCGCCGATGAACCGCAGAGGAGCAGTAAA CATCCTGTTCCAGCTGTTCGTGACGATAGGAATCTTCGTCGCCAACATCGTAAATTACTTAACTCTGAATCTCCACCCGTACGGATGGCGAGTGTCCCTA GGCATCGCCGGAGCACCGGCAGCGGTACTCTTCATCGGTTCAATGGTCATCTCGGAGACGCCGACTAGCCTGGTGGAGCACGAGAAGTTGGACAAGGGTT ACAAGACGCTGAAACTAGTCAGAGGAGTGGACGATGTGGACGCCGAATTCACCCAGATTAAGCTCGCCTGCGAGGCCGGAAAACGAGTAAAATCCCCCAT GAAAGAGCTCATGAAGAAATCAAGCTTCCCGCCGCTGATCATCGGTATCCTACTCCAAGTCTTCCAGCAATTTACAGGGATCAACGCCATCATGTTCTAC GCCCCTGTGCTTTTCCAGACCGTCGGATTCAAGAACGACGGTGCTCTTTTGTCCGCCGTCATCACCGGAATCGTCAACGTTTTCAGCACCATGGTCTCCG TGGTGGTCGTCGATAAACTGGGACGCAGGGCTCTCCTACTCCAGGCGTGCTGTCAGATGCTGGTGGCGCAGATAGCGATCGGAGTGATACTGCACATGAA CTTGACGGCGACCGGATCGTTGACCAAGGTCGAAGCCTTAGCGGTGGTCGTGCTGGTGTGTCTGTTCGTGATGGCATTCGCTTGGTCGTGGGGCCCACTG GGTTGGCTGATTCCCAGCGAGACATTCCCGGTGGAGACTAGAGCTGCAGGGTTCGCGTTCGCCGTCAGCTCAAACATGCTCTTCACTTTTGTCATCGCTC AAGCTTTCCTCTCCATGATGTGTCACATGAAGGCCTACATCTTCTTCTTCTTCGCCGCGTGGATCTTCGTCATGGGCATTTTCGTCCTCTTTCTCCTGCC TGAGACTAAAGGAGTTCCGATCGACGCCATGGCCGATCGTGTCTGGAAGAAACATCCTGTCTGGAGAAAATTCATGGACTAA
AA sequence Show only first row Show all	>Lus10021926 pacid=23158067 polypeptide=Lus10021926 locus=Lus10021926.g ID=Lus10021926.BGIv1.0 annot-version=v1.0 MEDYEKPSPDYFPSKLTIYVVICYILAAFGGLMFGYDIGISGGVTAMDDFLIKFFPKVYEKKLHVKEDNYCKYDDQNLQLFTSSLYLAALVSSFAASKAC DKLGRKPTILVASLFFLGGTALSAGAINMVMLIFGRVLLGIGVGFGNESVPLFLSEIAPMNRRGAVNILFQLFVTIGIFVANIVNYLTLNLHPYGWRVSL GIAGAPAAVLFIGSMVISETPTSLVEHEKLDKGYKTLKLVRGVDDVDAEFTQIKLACEAGKRVKSPMKELMKKSSFPPLIIGILLQVFQQFTGINAIMFY APVLFQTVGFKNDGALLSAVITGIVNVFSTMVSVVVVDKLGRRALLLQACCQMLVAQIAIGVILHMNLTATGSLTKVEALAVVVLVCLFVMAFAWSWGPL GWLIPSETFPVETRAAGFAFAVSSNMLFTFVIAQAFLSMMCHMKAYIFFFFAAWIFVMGIFVLFLLPETKGVPIDAMADRVWKKHPVWRKFMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26250			Major facilitator superfamily ...		Lus10021926 [exp]	0	1
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	7.9	0.8213
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	15.6	0.8087
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	19.0	0.8109
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	19.6	0.8062
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	22.4	0.7986
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	23.9	0.7382
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	25.3	0.7771
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	30.3	0.7854
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	30.7	0.7643
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	32.3	0.8004

Compare expression of checked genes

Lus10021926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.