Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 213 / 5e-63 Cyclin family protein (.1.2) AT4G19600 211 / 1e-62 CYCT1;4 Cyclin family protein (.1) AT4G19560 164 / 9e-46 CYCT1;2 Cyclin family protein (.1) AT1G27630 149 / 1e-41 CYCT1;3 cyclin T 1;3 (.1) AT1G35440 130 / 3e-35 CYCT1;1 cyclin T1;1 (.1) AT2G26430 82 / 5e-17 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041213 [exp] 647 / 0 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10040640 [exp] 200 / 3e-58 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10038329 [exp] 119 / 2e-29 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10036192 [exp] 119 / 3e-29 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10041418 [exp] 76 / 2e-14 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036191 [exp] 61 / 1e-11 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2) Lus10003151 [exp] 50 / 8e-07 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 49 / 4e-06 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150500 [exp] 400 / 6e-138 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.010G090400 [exp] 320 / 3e-107 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.003G148800 [exp] 213 / 9e-63 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 209 / 2e-61 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 206 / 4e-60 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 195 / 6e-56 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 169 / 9e-48 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G043600 [exp] 92 / 4e-20 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.010G090301 [exp] 74 / 3e-16 AT4G19600 50 / 1e-08 Cyclin family protein (.1) Potri.014G194900 [exp] 44 / 0.0001 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021927 pacid=23158052 polypeptide=Lus10021927 locus=Lus10021927.g ID=Lus10021927.BGIv1.0 annot-version=v1.0 ATGTCTTTTTCGAGAAATTATGGATCACGAGGCGGAACTATGTTCGATGATCGTTCATCCAACTTCAGTAGGAGCAGCTACGATTGGAGCACATTTGTGA ACGTGGGGTGGAATGATGATCACAATAATCGGCTGAATAATCAGGATTTCTTAGACTTCTCTTGGAAACTCACGAGCAATGTTAATGAAAGTGACAAATA CGGCAACCCTCCTAGCGGTGCTCCATCTTTGAAGAGGAGAAAGTTCAGCTCTACCATGTGGGAAGATGGTGCAAGACATCATCTGCATCCTAACTCATTT GAGGATGGTGGTAGAGACTATCAGCATTCAACTTCATATGGAGATGTTGCTCGGTACCCAAAACTGTCTAACACATGTGGAGATCGTCAGAGACAGTATG TGCAGCCTAAGTTGCGCAGAGATGGTGGAAGATGCCTTCCACAGGCCAGCTTTTATGAAACTTCCGTCCCCTTAATGCAAAACAATTGGCTCTCTGCTCC TTTGAGGTCCAACACTGAGGCATCCACGTCTACTAGGTGCAAACGTAGCCGCTCAATGCTAGAAGACGAGGAACCACTTTTCATGTCAAAGGATCACATT GAAAAATGCTCCCCCTCCAGGAAAGATGGTATTGATGCTCAACATGAAACGCATTTACGTTACTCATATTGTGCTTTCCTTCAAGATCTTGGGCTGCGGC TTGATTTGCCACAAACAACTACTGGCACTGCCATGGTTTTGTGTCACCGGTTTTTTATTCGCCGTTCACATGCTTGCCATGACAGATTTTTAATTGCTAC TGCTGCTCTTTTCCTTGCTGCCAAGTCAGAGGAGACTGCACGCCCTTTGAACGATGTATTGAGGAAATCCTGTGAAATTCTTCATAAGCAAGATTTCAGT TTATTGTCATATATACTCCCCATTGACTGGTTTGAGCAGTATCGGGAGCGAGTGATTACGGCTGAGCAAATGATATTGACGACTCTTAATTTTGAGCTTG GTGTGCAGCATCCTTATGCTCCCCTAACATCTGTCCTCGACAAGTTAGGTCTTGCACAGACTCTATTGGTGAATGTGGCCTTAAACTTGGTTAATGAAGG ACTTAGGAGCTCGTTATGGCTTCAGTTTAAGCCGTCACAAATTGCTGGTGGTGCCGCTTACCTTGCTGCAAAGTTCCTAAACCTGGACCTCACTTGTTAT CAAAACGTCTGGAAGGAGTTTCAAACACCACCCTCCGTTCTTCAAGATGTAGCACAGCAATTGATGGAGCTCTTGTAA
AA sequence Show only first row Show all	>Lus10021927 pacid=23158052 polypeptide=Lus10021927 locus=Lus10021927.g ID=Lus10021927.BGIv1.0 annot-version=v1.0 MSFSRNYGSRGGTMFDDRSSNFSRSSYDWSTFVNVGWNDDHNNRLNNQDFLDFSWKLTSNVNESDKYGNPPSGAPSLKRRKFSSTMWEDGARHHLHPNSF EDGGRDYQHSTSYGDVARYPKLSNTCGDRQRQYVQPKLRRDGGRCLPQASFYETSVPLMQNNWLSAPLRSNTEASTSTRCKRSRSMLEDEEPLFMSKDHI EKCSPSRKDGIDAQHETHLRYSYCAFLQDLGLRLDLPQTTTGTAMVLCHRFFIRRSHACHDRFLIATAALFLAAKSEETARPLNDVLRKSCEILHKQDFS LLSYILPIDWFEQYRERVITAEQMILTTLNFELGVQHPYAPLTSVLDKLGLAQTLLVNVALNLVNEGLRSSLWLQFKPSQIAGGAAYLAAKFLNLDLTCY QNVWKEFQTPPSVLQDVAQQLMELL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	2.2	0.9093
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	3.2	0.9233
AT4G13030			P-loop containing nucleoside t...		Lus10038204 [exp]	4.5	0.8861
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	4.9	0.8816
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	5.3	0.9115
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	5.7	0.9045
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	6.7	0.9040
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	8.8	0.8498
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	9.6	0.9108
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	10.2	0.8715

Compare expression of checked genes

Lus10021927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.