Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 537 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT5G10740 77 / 6e-15 Protein phosphatase 2C family protein (.1) AT4G31750 74 / 5e-14 WIN2 HOPW1-1-interacting 2 (.1) AT3G51470 72 / 3e-13 Protein phosphatase 2C family protein (.1) AT5G24940 71 / 1e-12 Protein phosphatase 2C family protein (.1) AT4G28400 64 / 6e-11 Protein phosphatase 2C family protein (.1) AT5G53140 63 / 2e-10 Protein phosphatase 2C family protein (.1) AT2G40860 63 / 4e-10 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT2G30020 60 / 2e-09 Protein phosphatase 2C family protein (.1) AT1G07160 60 / 2e-09 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041216 [exp] 980 / 0 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 716 / 0 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 652 / 0 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10026908 [exp] 70 / 6e-13 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 70 / 7e-13 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 70 / 1e-12 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 69 / 3e-12 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 66 / 8e-12 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 66 / 9e-12 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G091500 [exp] 674 / 0 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.008G149700 [exp] 663 / 0 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.018G013900 [exp] 71 / 3e-13 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G102500 [exp] 71 / 7e-13 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 71 / 7e-13 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 68 / 3e-12 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.019G071600 [exp] 67 / 1e-11 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 66 / 3e-11 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.018G115100 [exp] 63 / 2e-10 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 62 / 3e-10 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10021929 pacid=23158070 polypeptide=Lus10021929 locus=Lus10021929.g ID=Lus10021929.BGIv1.0 annot-version=v1.0 ATGATGACGCCTTCTCTTCACGCCATTATCGCTATTCTTCTCCTTTTGCTGCTTCTCCTCCTCCTCCTCATCCTCATCGCCTGTAGGCCATGGCGCCTCT TCCTCTCTTCTTCCTCCCGTTCTCGTTCTTCTACTCTTATGACTGGCGATGAGGAAGAGAGGCCACTTGTGTCAAATGTTGCGGATGCCCATGATGAAAC CAATCAAGGAGCAATAATTTATGATATTGAGGAAGCTTGTCCCCAAAATGATGGGCTTTTGCGTACGCCCCGCATGGAGGGACTTGTCCATAAACAAAGA ATTCCTTCAGCATCTCCTCACGTGGCTCCCCAAGCAGTTGGTAGCTTGATTTTAGAAGTATTTCCAGATCCTGTTGAGGATCTACCAGTTGGACAAACCC TCAAGTATTCTCCACTTGCTCGACGCTTGCCTGTGGTGTATAAACAGTTTAGGCCAGACAATCAAATTCCTAATGCCAAACCTGGTTCACAAACCAATAT GTTACCAGAGTTCACGATCAAACTTACTGATGATCAAAGAAGTTGCCTCTCCCTTGAGGTCATCTCTGGTCCTTCTAGTGGACAATGCTGCTCTGTACAA TCAACAAGCTCTTCACTGCTTACTGTCACGCTTGGAAGAGTTTCTAGTGACTTATTGGTAAAAGATTCAGAGGTGTCAGGGAAACATGCTATGATCAACT GGAATGCAGACAAAAAGAAATGGGAGGTTGTTGACATGGGTAGCCTTAATGGAACTCTTTTAAACTCTCGTCCAATCAACCACCCTGATCCTGGGACTAG ACACTGGGGTAAGCCAGTTGAGCTTTCAAGTGGAGACATAATAACTCTTGGCACAACGTCAAACATACAGGTCACTGTTACATCCAAGTCTGAAAGCTGG ATGCCTTTTGGTGTGGGCATGGCTTTAGATCCTATGGCTTTGCGCCGTGGTGGAAAGAAGCTACCCATGGAAGATGTGTGCTATTATTTCTGGCCCCTGC CAGGCATTCATGAGTTTGGTGCTTTTGGCATTTGCGATGGACATGGTGGAGTAGCAGCTGCGAAATCTGCCAGCAAGATGTTGCCAGAGAAAGTAGCCAG TATTTTATCCGACTCGGTAATACGGGGGAAGGTGATATCACTATGCGATGCTTCAGATGTTCTTAGAAATGTATTTTCTCAGACAGAAGCTTCCATGATT AACCACTATGAGGGTTGCACAGCAACATTGCTTCTGGTTTGGCGTGATGGAGATGGCTCTTTCTTTGCACAATGTGCAAATGTTGGGGATTCTGCATGTA TTATGAAGTATATCAAGATGACAGAAGACCATAGAGTAACCAGTTCTTCTGAAAGACTTCGAATCAATGGAATAGGAGAGCGATTGAGAGATGGGGAAAC ACGCCTTCATGGTTTGAATCTTGCTCGGATGCTTGGAGACAAATTCCTGAAACAGCAAGATGCTCGCTTCAGTTCAGAGCCTTACATAAGTCCAGCCGTG CACATAGATCGATCAAGCAGTTGCTTTGCAGTATTAGCCAGCGATGGTTTCTGGGATGTTATCAGTGTTAAAAAGGCTGTTCAGCTTGTCCAGCAGGTAA AGGAGAAGCAGCACGCAGATGGGGAGAATCCAGCCGAAAAGGTTGCTAATGTTTTGCTTGGTGAAGCTAGAACACAGCGTACAAAGGATAATACCTCCGT AATTTTCTTGGATTTTGATTCCAAGTTTAGACCGCCTTGTAAAGGTAATCCGTAA
AA sequence Show only first row Show all	>Lus10021929 pacid=23158070 polypeptide=Lus10021929 locus=Lus10021929.g ID=Lus10021929.BGIv1.0 annot-version=v1.0 MMTPSLHAIIAILLLLLLLLLLLILIACRPWRLFLSSSSRSRSSTLMTGDEEERPLVSNVADAHDETNQGAIIYDIEEACPQNDGLLRTPRMEGLVHKQR IPSASPHVAPQAVGSLILEVFPDPVEDLPVGQTLKYSPLARRLPVVYKQFRPDNQIPNAKPGSQTNMLPEFTIKLTDDQRSCLSLEVISGPSSGQCCSVQ STSSSLLTVTLGRVSSDLLVKDSEVSGKHAMINWNADKKKWEVVDMGSLNGTLLNSRPINHPDPGTRHWGKPVELSSGDIITLGTTSNIQVTVTSKSESW MPFGVGMALDPMALRRGGKKLPMEDVCYYFWPLPGIHEFGAFGICDGHGGVAAAKSASKMLPEKVASILSDSVIRGKVISLCDASDVLRNVFSQTEASMI NHYEGCTATLLLVWRDGDGSFFAQCANVGDSACIMKYIKMTEDHRVTSSSERLRINGIGERLRDGETRLHGLNLARMLGDKFLKQQDARFSSEPYISPAV HIDRSSSCFAVLASDGFWDVISVKKAVQLVQQVKEKQHADGENPAEKVANVLLGEARTQRTKDNTSVIFLDFDSKFRPPCKGNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10021929 [exp]	0	1
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10005770 [exp]	1.4	0.8009
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	13.0	0.7690
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10035573 [exp]	14.0	0.7475
AT3G62200			Putative endonuclease or glyco...		Lus10038041 [exp]	18.0	0.6446
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	19.3	0.7481
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	22.4	0.7435
AT5G49530			SIN-like family protein (.1)		Lus10024027 [exp]	25.5	0.7426
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	31.0	0.7330
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	32.0	0.6942
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	41.0	0.7028

Compare expression of checked genes

Lus10021929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.