Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 57 / 3e-10 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT3G06020 50 / 1e-07 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT1G03170 47 / 9e-07 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT5G22090 41 / 0.0002 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041217 [exp] 284 / 3e-98 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 93 / 3e-23 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 89 / 5e-22 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 54 / 5e-09 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 53 / 9e-09 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 51 / 6e-08 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 39 / 0.0009 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149600 [exp] 72 / 2e-15 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 63 / 3e-12 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 58 / 2e-10 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 49 / 3e-07 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.002G053400 [exp] 41 / 0.0002 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021930 pacid=23158029 polypeptide=Lus10021930 locus=Lus10021930.g ID=Lus10021930.BGIv1.0 annot-version=v1.0 ATGGGAACCATAGTTTACCAAGGTCTACAGTCTTATCTCGAGTCCCAGATCCTCGAATCCAGGACTCTCCGGCTCAGATTGTCCGCACCCAAGCCGCTGC CGCCACAGCATTTCCCCAAGCCTTGTTTCTCTACTGAAGATAAATTGATCAGACAGAAATCCACCGCCGCCGCCGTCGTTGATAGTTCGGGCGGATGGGA AGCTATTCAGTCCTTGTCGACGAACACGACGTCACAGCTGCTGAAACCCGCTTCTTATTACACCCAACGCTCCGTTTCATCACTCAGCGATAAAAGCCTG GAGCTTTGCACCGAGAATCTCGGCAGTGAGACCGGATCAGACGACGTCACTTCCGTCGAATCACTCTTCAGTCCTCCTTCTTGGTTTGGATCCGAATCGG AAAGAATTCATTCCGAGCCGTCGCCGCTGCCGCCGACGGGCGAAGAATCAGCCTCACCTCCGGCGACGAACAAGAAGAGGAAGTAA
AA sequence Show only first row Show all	>Lus10021930 pacid=23158029 polypeptide=Lus10021930 locus=Lus10021930.g ID=Lus10021930.BGIv1.0 annot-version=v1.0 MGTIVYQGLQSYLESQILESRTLRLRLSAPKPLPPQHFPKPCFSTEDKLIRQKSTAAAVVDSSGGWEAIQSLSTNTTSQLLKPASYYTQRSVSSLSDKSL ELCTENLGSETGSDDVTSVESLFSPPSWFGSESERIHSEPSPLPPTGEESASPPATNKKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10021930 [exp]	0	1
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	2.8	0.7272
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10041217 [exp]	4.7	0.6556
					Lus10009611 [exp]	7.3	0.6831
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10035082 [exp]	10.6	0.6886
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10000366 [exp]	13.0	0.6476
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	17.7	0.7063
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	23.2	0.6781
AT5G19875			unknown protein		Lus10024507 [exp]	23.2	0.6980
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10003656 [exp]	31.7	0.6412
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	36.1	0.6558

Compare expression of checked genes

Lus10021930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.