Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06050 310 / 6e-108 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1) AT1G60740 115 / 4e-32 Thioredoxin superfamily protein (.1) AT1G65970 112 / 5e-31 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G65980 112 / 1e-30 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT3G52960 110 / 2e-29 Thioredoxin superfamily protein (.1) AT1G65990 79 / 2e-16 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041218 [exp] 286 / 7e-96 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1) Lus10023180 [exp] 110 / 7e-30 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023662 [exp] 108 / 2e-29 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10015077 [exp] 108 / 3e-29 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10002843 [exp] 108 / 2e-28 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10003373 [exp] 107 / 5e-28 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024000 [exp] 317 / 8e-111 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1) Potri.013G102100 [exp] 112 / 5e-30 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.001G423500 [exp] 108 / 2e-29 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.018G083500 [exp] 107 / 5e-29 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10021932 pacid=23158023 polypeptide=Lus10021932 locus=Lus10021932.g ID=Lus10021932.BGIv1.0 annot-version=v1.0 ATGGGCCAGGCCCAATTAATCTCAATCAACCTAGTCCAGCCGTCTCTGGTCTCACTTCCTCATCATCCACCGCACTCTCAACATCGGCGAAGGCTGAAGA AAACTTCGAGCATCTACACAACCACAGTCCACAAGTATCGGAATCTTAATCAAGCAACAGAGATGGCATCTGCAGTAGTTAGAAGAGCCAAGGCGTCGGC ATTCAAGTCGGTGGTCGGCAGTCTACGAGTGGCTGGATCGTCGAGATCCTACGCCAAGGTTGCCGTTGGGGCTGATCTAGTATCGGCCGCCCCCGATGTC GCCCTCCAGAAAGCTCGCACCTGGGACGAAGGCGTCTCTTCCAAATTCTCCACTACCCCTCTCAAAGACATTTTCAAGGGCAAGAAAGTTGTCATCTTTG GTCTTCCAGGTGCATACACAGGTGTTTGCTCGCAGCAGCATGTCCCTAGTTACAAGAACAACGCAGATAAGTTCAAGGCTAAAGGAATTGATTCGATCAT TTGCGTGTCGGTTAACGACCCTTATGTGATGAATGGTTGGGCAGAGAAACTTCAAGCTAAAGATGATCTCGAATTCTACGGAGACTTTGATGGGAAGTTC CACAAGAGCTTGGAGCTAACTAAGGATCTCTCTGGTGCTTTGCTTGGACCTCGCTCTGAAAGATGGTCTGCTTATGTTGATGATGGGAAAGTTAAGGTCC TTAATGTCGAGGAAGTCCCGTCGGATTTCAAGGTTTCTGGCGGTGAGGTTATTTTGGGACTGATATGA
AA sequence Show only first row Show all	>Lus10021932 pacid=23158023 polypeptide=Lus10021932 locus=Lus10021932.g ID=Lus10021932.BGIv1.0 annot-version=v1.0 MGQAQLISINLVQPSLVSLPHHPPHSQHRRRLKKTSSIYTTTVHKYRNLNQATEMASAVVRRAKASAFKSVVGSLRVAGSSRSYAKVAVGADLVSAAPDV ALQKARTWDEGVSSKFSTTPLKDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKNNADKFKAKGIDSIICVSVNDPYVMNGWAEKLQAKDDLEFYGDFDGKF HKSLELTKDLSGALLGPRSERWSAYVDDGKVKVLNVEEVPSDFKVSGGEVILGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	0	1
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	1.0	0.8254
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	4.0	0.7858
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	9.2	0.7383
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10033312 [exp]	9.4	0.7216
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	9.8	0.7201
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	13.0	0.7643
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	13.0	0.7412
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	15.9	0.7292
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	16.4	0.7399
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	16.5	0.6779

Compare expression of checked genes

Lus10021932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.