Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19150 486 / 9e-173 pfkB-like carbohydrate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041220 [exp] 701 / 0 AT5G19150 498 / 3e-177 pfkB-like carbohydrate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203600 [exp] 533 / 0 AT5G19150 509 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF01256 [flax] [poplar] Carb_kinase Carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10021933 pacid=23158050 polypeptide=Lus10021933 locus=Lus10021933.g ID=Lus10021933.BGIv1.0 annot-version=v1.0 ATGTTAATCAGGCATGGCGTAAATCAGCTAGCTTGGTTGAGTATCGCCCAGCCTTCGGCAGCTGTTGTGAGAAGGCAGAGTTTCTTGATAAGGTGTCTGG GAGGAAGTCACAAAGTTCATAGTACAATGCAAGGTTCCGAGGCTGACGCTGAGACCATATTGAGAGCAATTACTCCTACTTTAGACCCAGTTAGATACAA GGGCCAAGCAGCCTTGTGCATTGTGGGTTCTTACTGTTTTCCTGCAAACTGGGTGGGATTGTTCTTCCCAGGGAAAATAGCTGTGATTGGAGGGTGCCGA GAGTATACTGGAGCTCCTTATTTTGCTGCTATTTCAGCCTTAAAAATTGGTGCAGATTTGTCTCATGTGTTCTGCACCAAAGATGCTGCTCCTGTTATCA AGAGCTATAGTCCTGAGTTGATCGTTCATCCGGTTCTCGAGGAGTCTTATAGTGTAAGGGAGGAGGAAAGATCAAATGTGGCTGCAAAAGTTGTTGCTGA GGTTGATAAATGGATGGAGAGATTTGATTGTCTTGTGATCGGACCTGGTCTAGGAAGGGATACATTTCTCCTGGACTGTGTCGGTGCGATCATGAAGCAG GCGAGGCTTTCAAATGTTCCACTTATTGTAGACGGGGATGGACTCTTTCTTATAACAAACAATGTTGATCTTGTTCGTGGTTATCCCTGGGCTGTTCTGA CGCCAAATGTGAACGAATACAAACGCCTGGTTCAGAAGATTCTCGGATGTGAAGTTGATGATGCTGATCCACAAGCACAATTGTTGTCCCTTGCAAAACA AATCGGCGGTGTTACGGTTCTGCGGAAAGGAAGATCCGACCTGGTCAGCGATGGTGAGATAGTGAAATCAGTGAGTATTTACGGATCATCTAGACGATGT GGCGGCCAGGGTGATATCCTCTCTGGAAGTGTTGCAGTATTTCTATCCTGGGCACGCCAACAAATTTCAGATGGCGAAGGCCATTTAAGCAAGAGCCCGA CGAATCCAACCGTTCTGGGATGCATTGCGGGCTCAGCTTTACTTCGAAAGGCTGCATCTCTAGCTTTCGTGAACAGAAAAAGATCGACCCTAACCTCCGA TATCATCGAATGCCTTGGAAAAAGTATGGAGGATATCTGCCCAGCATCTTGA
AA sequence Show only first row Show all	>Lus10021933 pacid=23158050 polypeptide=Lus10021933 locus=Lus10021933.g ID=Lus10021933.BGIv1.0 annot-version=v1.0 MLIRHGVNQLAWLSIAQPSAAVVRRQSFLIRCLGGSHKVHSTMQGSEADAETILRAITPTLDPVRYKGQAALCIVGSYCFPANWVGLFFPGKIAVIGGCR EYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVREEERSNVAAKVVAEVDKWMERFDCLVIGPGLGRDTFLLDCVGAIMKQ ARLSNVPLIVDGDGLFLITNNVDLVRGYPWAVLTPNVNEYKRLVQKILGCEVDDADPQAQLLSLAKQIGGVTVLRKGRSDLVSDGEIVKSVSIYGSSRRC GGQGDILSGSVAVFLSWARQQISDGEGHLSKSPTNPTVLGCIAGSALLRKAASLAFVNRKRSTLTSDIIECLGKSMEDICPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	0	1
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	7.0	0.8915
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	9.5	0.8679
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	10.6	0.8729
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	11.0	0.8601
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	11.1	0.8857
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	23.2	0.8629
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	26.5	0.8317
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	28.8	0.8288
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10006487 [exp]	33.8	0.8552
AT3G54130			Josephin family protein (.1)		Lus10035536 [exp]	34.0	0.8694

Compare expression of checked genes

Lus10021933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.