Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06100 169 / 4e-52 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT4G18910 125 / 4e-35 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT1G31885 124 / 2e-34 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT4G19030 122 / 1e-33 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37820 121 / 1e-33 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT1G80760 121 / 2e-33 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT5G37810 120 / 6e-33 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G10380 117 / 6e-32 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT2G34390 97 / 4e-24 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT5G47450 74 / 5e-16 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041222 [exp] 279 / 7e-95 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Lus10041674 [exp] 123 / 2e-35 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10024066 [exp] 123 / 3e-34 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 120 / 5e-33 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10029274 [exp] 117 / 4e-32 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10017358 [exp] 117 / 8e-32 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10007322 [exp] 114 / 1e-31 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10033268 [exp] 114 / 1e-30 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10035999 [exp] 108 / 1e-28 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203300 [exp] 213 / 5e-69 AT3G06100 261 / 1e-86 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) Potri.004G063000 [exp] 126 / 2e-35 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 124 / 1e-34 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G455000 [exp] 122 / 9e-34 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.010G112900 [exp] 120 / 3e-33 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 119 / 9e-33 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.001G046800 [exp] 119 / 1e-32 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 118 / 4e-32 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G146900 [exp] 118 / 4e-32 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.017G083300 [exp] 117 / 7e-32 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10021935 pacid=23158077 polypeptide=Lus10021935 locus=Lus10021935.g ID=Lus10021935.BGIv1.0 annot-version=v1.0 ATGACAGGTGTGATTCTTAAAATGAAGCAGCTACTGGATCAACATCCCTCCCCTCCTGCACCCAGCAATGGCTCTGTCTCGTCTGAGGTCGCGGGATCCA TCTCCGGCGCCCATGTTAACCCTGCTGTTACGATTGCTTTCGCCACGTTTGGTCATTTCCCCTGGCCTAGGGTTCCATTCTACATATTGTCGCAAATAAT CGGTTCGATTCTTGCGACATACATTGGGAAATCGGTGTACGGGATCGACCCGGATCTCATGGCTACAAGACCACTTCAGAACTGCGCTTCTTCCTTTTGG GTTGAGTTCATAGCCACTTTTATCATCATGTTCGTCGCCGCTTCATTGACCTTCCATGCCCAGTCTGTGGGTTACTTGTCAGGATTGATCATTGGGATTT CCATCGCGCTCGCGGTGCTCATTACTGGGCCGATTTCCGGGGGTTCGATGAACCCAGCAAGGTCGCTGGGACCAGCGATCGTGGCCTGGAACTTTAAGGA CGTGTGGGTTTATATAACAGCGCCGATTGGTGGAGCTCTGGCAGGGGCGATGATGTTCAATGTGCTGAACTTGCGGCAGCAGAGTAGTAGCCTACAGCAG TCTTCGTGTACACTGATTTGTGGGAGGGTTATATAA
AA sequence Show only first row Show all	>Lus10021935 pacid=23158077 polypeptide=Lus10021935 locus=Lus10021935.g ID=Lus10021935.BGIv1.0 annot-version=v1.0 MTGVILKMKQLLDQHPSPPAPSNGSVSSEVAGSISGAHVNPAVTIAFATFGHFPWPRVPFYILSQIIGSILATYIGKSVYGIDPDLMATRPLQNCASSFW VEFIATFIIMFVAASLTFHAQSVGYLSGLIIGISIALAVLITGPISGGSMNPARSLGPAIVAWNFKDVWVYITAPIGGALAGAMMFNVLNLRQQSSSLQQ SSCTLICGRVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10021935 [exp]	0	1
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	8.0	0.8445
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	9.9	0.8271
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	10.8	0.8260
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	11.5	0.8314
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	14.7	0.8246
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	16.1	0.8246
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	17.3	0.8246
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	18.5	0.8246
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	19.7	0.8246
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	24.0	0.8106

Compare expression of checked genes

Lus10021935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.