Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) AT1G03230 484 / 4e-170 Eukaryotic aspartyl protease family protein (.1) AT5G19120 199 / 1e-59 Eukaryotic aspartyl protease family protein (.1) AT5G19100 182 / 7e-53 Eukaryotic aspartyl protease family protein (.1) AT5G19110 173 / 1e-49 Eukaryotic aspartyl protease family protein (.1) AT5G48430 158 / 9e-44 Eukaryotic aspartyl protease family protein (.1) AT5G10770 76 / 1e-14 Eukaryotic aspartyl protease family protein (.1) AT2G42980 71 / 7e-13 Eukaryotic aspartyl protease family protein (.1) AT2G39710 69 / 1e-12 Eukaryotic aspartyl protease family protein (.1) AT3G59080 68 / 4e-12 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041223 [exp] 780 / 0 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 660 / 0 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 621 / 0 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 488 / 4e-172 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 461 / 5e-161 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 417 / 1e-143 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 414 / 2e-143 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 281 / 2e-90 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 253 / 2e-79 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 599 / 0 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 566 / 0 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 532 / 0 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 322 / 4e-106 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 315 / 2e-103 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 313 / 1e-102 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 304 / 3e-99 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 302 / 2e-98 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 298 / 4e-97 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 293 / 4e-95 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021936 pacid=23158004 polypeptide=Lus10021936 locus=Lus10021936.g ID=Lus10021936.BGIv1.0 annot-version=v1.0 ATGGCTCTTCCTTGTAGCTGCATCTTCCTTCTTTTTTCATGTCTTCTCTTCTCCATCACAACATCTGAAGCAAAATCATCATTCAGGCCTAAAGCACTTG TCCTTCCAGTTTCTAAAGACCCATCAACTCTCCAATACATTGCCCAAATCAACCAAAGAACCCCTCTTGTCCCAGTCAAGCTATCTGTTGACCTTGGCGG GCAGTACATGTGGGTTGACTGTGAACAAGCCTATGTCTCTTCATCCTACAAGCCTAATCGTTGCAGATCGGCTCTGTGCAATCTCGCAAACTCACAGAGC TGCATCACTGAATGCTACTCAAGTCTCAAACCAGGGTGCAGTAACAATACATGTGCCCTTATGCCTGAAAACACAGTGACCCGGACCGGTACCTCTGGAG AGTTCGGCCAGGATGTTGTGTCCATTCAATCAACTGATGGATCCAATCCCGGACGACTTGCCAAAGTTCCAAACTTGCTCTTTACTTGTGGTGCCACATT CTTACTAGAGGGACTTGCTAAGGGTGTTAAAGGTATGGCTGGACTTGGGAGGACTAAAATCTCAATCCCATCCCAATTCTCTGCTACTTTCAGTTTTCAC AGGAAGTTTGCTATTTGTTTGAGCTCGTCGGTAAATTCGAAAGGAGTTGTCTTTTTCGGAGATGGCCCTTATGTCCTTATGCCAAAAATGGATGTCTCAA AGTCACTTATGTACACCCCCTTGATTCTGAACAAGGTGAGCACAGCTTCTGGTTCTTTTGAGGGTGATGCTTCCTCTGACTATTTCATTGGAGTTAAGTC AATCAAGATCAACGGAGATTATACCGTCCCATTGAATGCAACATTGCTAAAAATCGACAACGAAGGGAATGGTGGGACAAAGATCAGCACTGTTCAACCT TACACCGTACTCGAGACTTCCATTCACAAAGCTCTCACTAATGCTTTTGCTAGACAGCTTTCTAAAGTCCCTAGAGTTGCAGCAGTTGCACCGTTCGATT TGTGTTTCGACTCGACTGCGATTGGAAGCACTAGAGTTGGTCCTGCTGTGCCTCCGATCGATCTGGTGTTGCAGAGCAGCAGTGTGGTTTGGAGAATATT TGGTGCCAACTCTATGGTGCAAGTGAAGAAAGATGTTATTTGCCTTGGTTTTGTAGATGGCGGGGTTAATCCCAGGACTTCTATAGTCATTGGAGGGCAT CAGTTGGAAGATAACCTACTGCAATTTGATCTTGCAAGTTCAAGACTTGGGTTCAGCTCTTCATTGCTGTTCGGGAAAACTACTTGTGCAAATTTCAACT TCACCTCTACAGCTTAA
AA sequence Show only first row Show all	>Lus10021936 pacid=23158004 polypeptide=Lus10021936 locus=Lus10021936.g ID=Lus10021936.BGIv1.0 annot-version=v1.0 MALPCSCIFLLFSCLLFSITTSEAKSSFRPKALVLPVSKDPSTLQYIAQINQRTPLVPVKLSVDLGGQYMWVDCEQAYVSSSYKPNRCRSALCNLANSQS CITECYSSLKPGCSNNTCALMPENTVTRTGTSGEFGQDVVSIQSTDGSNPGRLAKVPNLLFTCGATFLLEGLAKGVKGMAGLGRTKISIPSQFSATFSFH RKFAICLSSSVNSKGVVFFGDGPYVLMPKMDVSKSLMYTPLILNKVSTASGSFEGDASSDYFIGVKSIKINGDYTVPLNATLLKIDNEGNGGTKISTVQP YTVLETSIHKALTNAFARQLSKVPRVAAVAPFDLCFDSTAIGSTRVGPAVPPIDLVLQSSSVVWRIFGANSMVQVKKDVICLGFVDGGVNPRTSIVIGGH QLEDNLLQFDLASSRLGFSSSLLFGKTTCANFNFTSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	0	1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	2.8	0.9515
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	3.5	0.9490
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	6.9	0.9428
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	7.3	0.9295
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	7.3	0.9443
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	8.4	0.9413
					Lus10030676 [exp]	8.5	0.9061
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	9.5	0.9235
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	9.9	0.9304
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010139 [exp]	10.1	0.9204

Compare expression of checked genes

Lus10021936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.