Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 325 / 1e-108 Eukaryotic aspartyl protease family protein (.1) AT1G03230 318 / 6e-106 Eukaryotic aspartyl protease family protein (.1) AT5G19120 142 / 5e-39 Eukaryotic aspartyl protease family protein (.1) AT5G19110 137 / 8e-37 Eukaryotic aspartyl protease family protein (.1) AT5G19100 134 / 9e-36 Eukaryotic aspartyl protease family protein (.1) AT5G48430 103 / 2e-24 Eukaryotic aspartyl protease family protein (.1) AT5G10770 67 / 5e-12 Eukaryotic aspartyl protease family protein (.1) AT5G33340 66 / 2e-11 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT3G18490 55 / 5e-08 Eukaryotic aspartyl protease family protein (.1) AT1G64830 54 / 5e-08 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041224 [exp] 467 / 2e-164 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 448 / 1e-157 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 433 / 6e-151 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 421 / 2e-146 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 406 / 5e-141 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 328 / 5e-110 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 301 / 1e-99 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 196 / 1e-58 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10010278 [exp] 169 / 9e-50 AT1G03220 259 / 1e-83 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068900 [exp] 398 / 2e-137 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 387 / 5e-133 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 368 / 1e-125 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 197 / 5e-59 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.008G203100 [exp] 192 / 3e-57 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 192 / 5e-57 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 188 / 2e-55 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 177 / 2e-51 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 176 / 4e-51 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 125 / 2e-32 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021937 pacid=23157997 polypeptide=Lus10021937 locus=Lus10021937.g ID=Lus10021937.BGIv1.0 annot-version=v1.0 ATGGCTCTTGGTCGTAGCTGCATTTTCCTTCTCTCAATTTCATGTCTTCTCTTCTCCGTCTCAACATCTGAAGCACAATCATCATTCAAACCTAAACCAC TCGTCCTTCCACTTTCCAAAGACCCAACTACTCTCCAACACATTGCCCAAATCAACCAAAGAACCCCTCTCGTCCCAGTCAAGCTTACTGTTGATCTTGG TGGCAAGTACCTCTGGGTTGACTGTGAGCAAGGCTATGTCTCTTCATCCTACAAGCCTGCTCGTTGTGGATCGGCTCAATGCTCGCTTGCAAAGTCAAGG ACCTGCAACAACAATACCTGTGAACTTTTGCCTGATAACACAGTCACACGGACCGTTAGCGTTGGAGACCTTGGCCAGGATGTTGTAACCATTCAATCAA CTGATGGACGCGTAGCAAAAGTTGCAAACTTTCTGTTGAGTTGTGGGACAAATTTAGCAGAGGGACTTGCTAAAGGTGTTGTAGGTATGGCTGGACTTGG GAGGGATAAAATCTCAATCACATCTCAATTCTCTGATGCTTTCAGTTTGGACAGCAAGTTTGCTATTTGTTTGAGCTCTTCCAAAGGAGTTGTCTTTTTC GGAGATGGTCCTTATTTTCTTGGACCAAAGATTGATGTGATGCTTCCTCTGACTCAACCTTCCACCCTACTCGAGACTTCCATTCACAAAGCTCTCACTA ATGCTTTCGCGGGACAGCTGTCTAATAAAGTTCCTAGAGTTGCAGCGGTTGCACCGTTCGATTTGTGTTTCGACTCGACTGAGATTGGAAGCACTCGAGT CGGTCCTGCTGTGCCTCGGATCGATCTGGTGTTGCATAGAAGCAGTGTGGTGTGGAGTATCTTTGGTGCCAACTCTATGGTTCAAGTGAAAAAAGGTGTT CTTTGCCTTGGTTTTGTAGATGGTGGGCTTAATCCCAGGACTTCTATTATCATCGGAGGGCATCAGTTGGAGGATAACCTGTTGCAGTTTGATGTTGCTA AGTCAAGATTTGGGTTCAGCTCTTCGTTGCTGTTCAGGCAAACTAGTTGTGCCAACTTCAACTTTACATCTAAAGCTTAA
AA sequence Show only first row Show all	>Lus10021937 pacid=23157997 polypeptide=Lus10021937 locus=Lus10021937.g ID=Lus10021937.BGIv1.0 annot-version=v1.0 MALGRSCIFLLSISCLLFSVSTSEAQSSFKPKPLVLPLSKDPTTLQHIAQINQRTPLVPVKLTVDLGGKYLWVDCEQGYVSSSYKPARCGSAQCSLAKSR TCNNNTCELLPDNTVTRTVSVGDLGQDVVTIQSTDGRVAKVANFLLSCGTNLAEGLAKGVVGMAGLGRDKISITSQFSDAFSLDSKFAICLSSSKGVVFF GDGPYFLGPKIDVMLPLTQPSTLLETSIHKALTNAFAGQLSNKVPRVAAVAPFDLCFDSTEIGSTRVGPAVPRIDLVLHRSSVVWSIFGANSMVQVKKGV LCLGFVDGGLNPRTSIIIGGHQLEDNLLQFDVAKSRFGFSSSLLFRQTSCANFNFTSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021937 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	5.7	0.7054
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	11.4	0.6477
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010212 [exp]	14.1	0.6153
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	18.9	0.6177
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	23.5	0.6139
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10037137 [exp]	28.6	0.5980
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	30.3	0.5974
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	34.3	0.5908
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	35.2	0.5908
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	36.1	0.5908

Compare expression of checked genes

Lus10021937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.