Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 454 / 4e-158 Eukaryotic aspartyl protease family protein (.1) AT1G03230 454 / 4e-158 Eukaryotic aspartyl protease family protein (.1) AT5G19120 174 / 1e-49 Eukaryotic aspartyl protease family protein (.1) AT5G19110 165 / 4e-46 Eukaryotic aspartyl protease family protein (.1) AT5G19100 148 / 4e-40 Eukaryotic aspartyl protease family protein (.1) AT5G48430 148 / 6e-40 Eukaryotic aspartyl protease family protein (.1) AT3G25700 68 / 4e-12 Eukaryotic aspartyl protease family protein (.1.2) AT3G59080 66 / 2e-11 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 65 / 4e-11 Eukaryotic aspartyl protease family protein (.1) AT2G39710 62 / 5e-10 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041224 [exp] 692 / 0 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 601 / 0 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 587 / 0 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 566 / 0 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 413 / 2e-142 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 404 / 3e-139 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 367 / 1e-123 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10034036 [exp] 261 / 4e-82 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10034035 [exp] 229 / 4e-70 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 524 / 0 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 489 / 1e-171 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 475 / 4e-166 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 286 / 3e-92 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 274 / 2e-87 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 274 / 2e-87 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 273 / 6e-87 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 268 / 3e-85 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 264 / 2e-83 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 261 / 1e-82 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021938 pacid=23157989 polypeptide=Lus10021938 locus=Lus10021938.g ID=Lus10021938.BGIv1.0 annot-version=v1.0 ATGGCTCGCCTTTGTAGCTGCATCTCCCTTCTCTTGTCACTTCTTCTCTTCTCCATCACAACATCTGAAGCACAATCATCATTCAAACCTAAAGCACTTG TCCTTCCAGTCACCAAAGACTCAAAAACTCTCCAATACAATGCCATAATCAACCAAAGAACCCCTTTCGTCCCCCTCAACCTAACTCTTGATCTCGGTGG GCGCTACTTCTGGGTTGACTGTGAACAAGGCTACGTCTCATCATCCTACAAGCCTATTGCTTGCGAATCGGCTGCATGCAATCTCGCAAACTCAAAGAGC TGCAACACTAAATGCTACTCGAAACTAAAACCAGGCTGCAACAACAACACGTGTGGCCTTTTTCCTGATAACCCAATGACACAGATCCTTTCCTCTGGAG ACCTGGGCCAGGATATTGTAGCCATTCAATCAACTGATGGATCGAACCCCGGAATAATCGCCAAAGTTCCAAACTTTCTTTTCAGCTGTGCAGACACATA CTTGCTGAATGGACTTTCTCAAAGCGTTAAAGGTATGGCTGGACTTGGCAGGACTAAAATCTCATTCCCATCTCAATTCTCTGCTGCTTTGAGTTTCGAC AGAAAGTTTGCTCTTTGTTTGAGCTCCTCCACAAATTCCAGAGGGGTTGTCTTCTTTGGAAACGGTCCTTATGTTCTTCTGCCAAACATTGATGTCTCAA AGTCACTTATTTCCACCCCCTTGATTTTGAACAAAGTTAGTATTTACTCCGAGAGTGAACCTTCCCCTGACTATTTCATTGGAGTTAAGTCAATCAAGAT CAACGGCGATCTTACTGTTCCGTTCAATCCAACACTGCTGAAAATCAACAAAGAAGGGTTTGGTGGGACAAAGATCAGCACTATTCATCCCTACACTGTA CTTGAATCTTCCATTCACAAAGCTCTTACTGATGCTTTTGCTAGACAGCTTTCTAATAAAGTTCCTAGAGCTGCATCGGTTGCGCCGTTTGATTTGTGTT TCGACTCGAATTCGATTGGAAGTACTAGACTCGGTCCTGCAGTGCCTCGGATAGATCTGGTGTTGCAGAGCAGCAGTGTGGTTTGGAGCATCTTTGGTGC AAACTCTATGGTTGAAGTGAAAAAAGATGTTCTTTGCCTTGGTTTTGTGGACGGTCTTGTTTTTGTGGACGGTGGGGTTAATCCCAGGACTTCTATAGTC ATTGGAGGGCATCAGTTGGAGGATAATTTGCTGCAGTTTGATGTTGCTAATTCAAGACTTGGGTTCAGCTCTTCGTTGCTGTCCAGGAAAACTAACTGTG CAAACTTCAACTTTACCCCTGTGTTTGACAAGGGGGGTCTTGCTTGTGTTAACCTCTATCCTTTGTTTAACTAG
AA sequence Show only first row Show all	>Lus10021938 pacid=23157989 polypeptide=Lus10021938 locus=Lus10021938.g ID=Lus10021938.BGIv1.0 annot-version=v1.0 MARLCSCISLLLSLLLFSITTSEAQSSFKPKALVLPVTKDSKTLQYNAIINQRTPFVPLNLTLDLGGRYFWVDCEQGYVSSSYKPIACESAACNLANSKS CNTKCYSKLKPGCNNNTCGLFPDNPMTQILSSGDLGQDIVAIQSTDGSNPGIIAKVPNFLFSCADTYLLNGLSQSVKGMAGLGRTKISFPSQFSAALSFD RKFALCLSSSTNSRGVVFFGNGPYVLLPNIDVSKSLISTPLILNKVSIYSESEPSPDYFIGVKSIKINGDLTVPFNPTLLKINKEGFGGTKISTIHPYTV LESSIHKALTDAFARQLSNKVPRAASVAPFDLCFDSNSIGSTRLGPAVPRIDLVLQSSSVVWSIFGANSMVEVKKDVLCLGFVDGLVFVDGGVNPRTSIV IGGHQLEDNLLQFDVANSRLGFSSSLLSRKTNCANFNFTPVFDKGGLACVNLYPLFN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	1.7	0.9307
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	1.7	0.9355
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10016208 [exp]	2.0	0.9268
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	2.0	0.9348
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10038674 [exp]	3.7	0.8893
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	4.0	0.9036
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	5.1	0.8899
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	5.6	0.8647
AT2G34930			disease resistance family prot...		Lus10006947 [exp]	6.6	0.8467
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	6.9	0.9149

Compare expression of checked genes

Lus10021938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.