Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19120 219 / 2e-67 Eukaryotic aspartyl protease family protein (.1) AT1G03230 198 / 5e-59 Eukaryotic aspartyl protease family protein (.1) AT1G03220 196 / 4e-58 Eukaryotic aspartyl protease family protein (.1) AT5G19110 123 / 2e-31 Eukaryotic aspartyl protease family protein (.1) AT5G48430 113 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT5G19100 108 / 5e-26 Eukaryotic aspartyl protease family protein (.1) AT3G25700 59 / 2e-09 Eukaryotic aspartyl protease family protein (.1.2) AT2G39710 54 / 9e-08 Eukaryotic aspartyl protease family protein (.1) AT5G10770 52 / 4e-07 Eukaryotic aspartyl protease family protein (.1) AT5G22850 48 / 9e-06 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041004 [exp] 311 / 2e-105 AT5G19120 104 / 4e-26 Eukaryotic aspartyl protease family protein (.1) Lus10022958 [exp] 209 / 2e-66 AT1G03230 78 / 3e-17 Eukaryotic aspartyl protease family protein (.1) Lus10039217 [exp] 201 / 2e-63 AT5G19120 78 / 1e-17 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 210 / 3e-63 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 208 / 4e-63 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 208 / 8e-63 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 187 / 2e-54 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 178 / 1e-51 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 176 / 2e-50 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203100 [exp] 284 / 7e-92 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 218 / 2e-66 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 211 / 8e-64 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 205 / 1e-61 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 166 / 1e-46 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 166 / 1e-46 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 165 / 4e-46 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 162 / 3e-45 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 161 / 5e-45 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 158 / 1e-43 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021939 pacid=23158028 polypeptide=Lus10021939 locus=Lus10021939.g ID=Lus10021939.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCCACTTATCATCGTCGTTTCCCTTTCCCTCATTCTCCTCCACATCATCCATGCCTCCTCCAATCTCCTCCTACTCCCTGTCGCCAAAG ATCCCGCCACTCACCAGTTCACTACACTAATCCACCACCCTCCCCATCTTTACCTCCTCCAACCCATCAAGCTCGTCGTCGATCTCGGCAGCCCTTCTCT CTGGCTCCACTGCTCATCACCTCAGCACCTCAATCTCATTCCCCGCCGCTCAATCCAATGCACCAAGGCGAATCCCGACGCCGGCCATCTTTCTCATAAA ACCGCAGCTTGCCATGTCGAAAATCGTAACGACGTCAGCGGGTTAAGATCCACCGGCCAGCTCGTGGAAGCCCCTATAGCCGTCCGATCGATCGGCGGGT CAACGGCTACGGTTGACCGCTTCCTCTTCTCTTGCGGGTCAACGTTGATGCTGAACAGCCTGACAAGTGGCGCTCTTGGAATGATCGGATTAGGAGGAAG AAAGAGCCAGATCTCCCCGACGGCACAGTTTGCGGCAGCGTTCGGTTACCGAAGCAGGAGGTTCGCCGTCTGCCTCCCGAATTCTGACATCGGCGGCGTA TTGGCGTTCGGTGATTCTCCTGTTGAATCCGTATTCGGAACGGAGATATCAAGGTCTCTGCTTTACACTCCCCTCGTTGCCTCGTCCTCCTCCGGCGGCG AATACTTCATCAATTTGAAGTCGATCAGAATCGACGGCGAGAAGGTTTCTTTAAACAGAGATAGAATCGGGTTAGCGAAATTAAGTACAACGGTGCCTTA CACTTTAATGGAGAGCTGGTTATACAGAATCTTCACGGAAGCGTATTTGAAAGCGGCGGCGAAGGTTAACATGAAGAGAGTACTGAAAGCCGTATCGCCG TTTGGTCTCTGTTTTTCGAGATTGGCGAATCAGTCGATTCCTGTGATCGATCTTGCTTTGCAGAGTGAGATGGTGAAGTGGAAGGTAGAGAGGAAGAATT CGATGGTGTCGGTGAAGGGCGAAGAAGAAGAAGGAGAAGTGATGTGTTTGGGGATTTTGGAAGGGGGGTCTGAATTGGAAGCTGCGGTTGTGATCGGAGG TGTACATATGGAAGATAGAGTTATGGAGTTTGATTTGGATGGGTCTAGGCTAGGATTCAGTTCTACGATGAAACAGAGGACTTGTTCTGATATCATTTCC CACTCGTCTCTTCCAGAGTCGTCGTCGTCGTACTGA
AA sequence Show only first row Show all	>Lus10021939 pacid=23158028 polypeptide=Lus10021939 locus=Lus10021939.g ID=Lus10021939.BGIv1.0 annot-version=v1.0 MASLPLIIVVSLSLILLHIIHASSNLLLLPVAKDPATHQFTTLIHHPPHLYLLQPIKLVVDLGSPSLWLHCSSPQHLNLIPRRSIQCTKANPDAGHLSHK TAACHVENRNDVSGLRSTGQLVEAPIAVRSIGGSTATVDRFLFSCGSTLMLNSLTSGALGMIGLGGRKSQISPTAQFAAAFGYRSRRFAVCLPNSDIGGV LAFGDSPVESVFGTEISRSLLYTPLVASSSSGGEYFINLKSIRIDGEKVSLNRDRIGLAKLSTTVPYTLMESWLYRIFTEAYLKAAAKVNMKRVLKAVSP FGLCFSRLANQSIPVIDLALQSEMVKWKVERKNSMVSVKGEEEEGEVMCLGILEGGSELEAAVVIGGVHMEDRVMEFDLDGSRLGFSSTMKQRTCSDIIS HSSLPESSSSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	1.0	0.9580
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	1.4	0.9498
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	3.2	0.9396
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	3.5	0.9405
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	3.5	0.9474
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	4.9	0.9035
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	4.9	0.9378
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	5.3	0.9326
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	5.7	0.9313
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	6.3	0.9180

Compare expression of checked genes

Lus10021939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.