Plant FIBer expression Database

Lus10021941 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G202800
[exp]
47 / 7e-06 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10021941 pacid=23158017 polypeptide=Lus10021941 locus=Lus10021941.g ID=Lus10021941.BGIv1.0 annot-version=v1.0
ATGATCGGAAATGGCGGCCACCCGGGGATGATGATGAACAAAGCCGGAGGGATGATGATGCCACCGCATCTTGGGCAGCACAATGGAGCTCCCGCCGGGA
AGAAGGGCGGCAGCGGCGGCGGGGGTGGTCCGGTTCCTGTTCAATTCAATCACGGTGGCGGTGGTGGGAAGAAAGGCGGAGGGAATCCTAATCAGAATCA
GAATCAGAACGGAAAAGTAGGCGGCGGTCGTGGCGGTGGTGGTGGAGGAAAGCCACAAGACAAGAAAAATAGTGGCCACGGTGGTGGTGGAGGAAGCAAT
GGGAAGAACGCTCCCAACGGCAATAATGGCGGTGGCGACAAGGGTAATAACATCCACATGGGCGGGGGTAAAAAGGGAAATAATGGTGGTGGTGGGAACA
ACTACGATTTTCGGAGCATGGGTGGACCCCATATGGGCCAAATGGGCGGAATGAGCATGCCACAACAAATGGGCCAAATGAGCAACATGGGAGCCGTGAA
AAGGTTGGCGGCTTTGCAAGGCCTGCCGTTGAACGGCGGCGGGCGTCCTCCTGTCGGGTATTTTCAAGGAGCTGGTCCGGATGCAATGCCGGGCAACCCA
CTCCAACAGCAGCAGCAGCAGCAACAGCAGTACATGGCTGCGATGATGAATCAGCAGCGAGCAGCGGCGGCAATCCCCGCCGGTGGGAACGAGAGGTTCC
AGCCGATGATGTACGCCAGACCGCCGCCGGCTGTAAACTACGCTCCGCCGTACCCATATCCATACCCGCACGCCAACGACCCGTATACGAATTACTTCAG
CGACGAAAACACCTCTAGCTGCAATGTGATGTAG
AA sequence
>Lus10021941 pacid=23158017 polypeptide=Lus10021941 locus=Lus10021941.g ID=Lus10021941.BGIv1.0 annot-version=v1.0
MIGNGGHPGMMMNKAGGMMMPPHLGQHNGAPAGKKGGSGGGGGPVPVQFNHGGGGGKKGGGNPNQNQNQNGKVGGGRGGGGGGKPQDKKNSGHGGGGGSN
GKNAPNGNNGGGDKGNNIHMGGGKKGNNGGGGNNYDFRSMGGPHMGQMGGMSMPQQMGQMSNMGAVKRLAALQGLPLNGGGRPPVGYFQGAGPDAMPGNP
LQQQQQQQQQYMAAMMNQQRAAAAIPAGGNERFQPMMYARPPPAVNYAPPYPYPYPHANDPYTNYFSDENTSSCNVM

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06130 Heavy metal transport/detoxifi... Lus10021941
[exp]
0 1
AT3G06130 Heavy metal transport/detoxifi... Lus10041228
[exp]
1.0 0.9209
AT1G76660 unknown protein Lus10025171
[exp]
1.4 0.9163
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Lus10002149
[exp]
2.4 0.9062
AT2G15290 ATTIC21, TIC21,... PERMEASE IN CHLOROPLASTS 1, CH... Lus10019814
[exp]
4.0 0.8841
AT4G23630 RTNLB1, BTI1 Reticulan like protein B1, VIR... Lus10032313
[exp]
4.2 0.8663
AT2G44830 Protein kinase superfamily pro... Lus10028208
[exp]
4.5 0.8709
AT3G57070 Glutaredoxin family protein (.... Lus10018025
[exp]
6.3 0.8579
AT1G80870 Protein kinase superfamily pro... Lus10014361
[exp]
7.7 0.8550
AT4G28570 Long-chain fatty alcohol dehyd... Lus10022903
[exp]
7.9 0.8648
AT2G34510 Protein of unknown function, D... Lus10038495
[exp]
8.5 0.8603

Lus10021941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.