Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19070 296 / 3e-101 SNARE associated Golgi protein family (.1) AT1G03260 292 / 1e-99 SNARE associated Golgi protein family (.1) AT1G22850 94 / 6e-22 SNARE associated Golgi protein family (.1) AT2G02370 63 / 3e-11 SNARE associated Golgi protein family (.1.2) AT4G22850 56 / 5e-09 SNARE associated Golgi protein family (.1.2) AT1G12450 53 / 5e-08 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004421 [exp] 356 / 2e-124 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 353 / 1e-123 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 242 / 8e-80 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 221 / 5e-72 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 141 / 8e-38 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10041062 [exp] 89 / 1e-20 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 89 / 2e-20 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 66 / 3e-12 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 57 / 4e-09 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030800 [exp] 323 / 1e-111 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 322 / 1e-111 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 97 / 2e-23 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 97 / 3e-23 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 57 / 2e-09 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.001G078700 [exp] 56 / 5e-09 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 56 / 9e-09 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 51 / 3e-07 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10021942 pacid=23158085 polypeptide=Lus10021942 locus=Lus10021942.g ID=Lus10021942.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTCACCTGGGCCTCTGCTCTGAGGATCACTGTCCTCCTCCTCCTCCTTGCCGCTGTTATTGTCGCCTGCTTCACTCTTCCCGTTGAAAAGG ATCTTGGACCTTGGGGTCCTCTTGTGCTTGCCGTGGCATATATACCTTTGACGATCTTGGCTGTTCCAGCATCAGTGCTTACTCTTGGTGGTGGATACCT ATTTGGGCTGCCTATTGGCTTTGTTGCGGATTCTATTGGTGCCGCCATTGGTGCAGGAGCTGCGTTTCTTATTGGAAAAACTCTTGGAAGATCTATAGTT GTATCAAAGTTGAAGGATTATCCACAGTTCAGATCAGTTGCTATTGCTATTCAAAGATCTGGTTTCAAGATTGTTCTGTTGCTTCGACTTGCTCCATTGG TCCCTTTTAACATGTTGAATTATTTACTCTCAGTCACTCCTGTTTCATTTGCGGAGTATATGCTTGCTTCCTGGTTAGGTATGATGCCAATAACACTTGC ATTAGTCTATGTTGGAACCACTCTCAAGGATCTCTCTGATGTAACGCATGGGTGGAGTGAGTTTTCACCAACTCGTTGGGTGATGATTGCATTAAGCTTC ATTATATCTGTGGGACTAATGATCGTGGTCACGAAAGTTGCCAAGTCAGCTCTGGACAAAGCTTTGGCCGAAACTGATGGCATAGATGCATCAATGGACT CGCCAGAGTTGCCAGTACTGGTGATGGATCCTTCCAGTGATCTGAACCAGCCACTCATCGTCAAGATAGACTCTGAAGATTGCAAGGAGAGGCGATAA
AA sequence Show only first row Show all	>Lus10021942 pacid=23158085 polypeptide=Lus10021942 locus=Lus10021942.g ID=Lus10021942.BGIv1.0 annot-version=v1.0 MASFTWASALRITVLLLLLAAVIVACFTLPVEKDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPIGFVADSIGAAIGAGAAFLIGKTLGRSIV VSKLKDYPQFRSVAIAIQRSGFKIVLLLRLAPLVPFNMLNYLLSVTPVSFAEYMLASWLGMMPITLALVYVGTTLKDLSDVTHGWSEFSPTRWVMIALSF IISVGLMIVVTKVAKSALDKALAETDGIDASMDSPELPVLVMDPSSDLNQPLIVKIDSEDCKERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	0	1
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	3.9	0.8510
AT4G04180			P-loop containing nucleoside t...		Lus10009809 [exp]	4.5	0.8010
					Lus10006129 [exp]	4.9	0.8603
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	5.7	0.8560
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	8.9	0.8459
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	10.2	0.8413
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	11.1	0.8493
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	12.0	0.8283
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	15.5	0.8248
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	15.9	0.8430

Compare expression of checked genes

Lus10021942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.