Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 442 / 1e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 417 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 408 / 3e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 404 / 8e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 404 / 1e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 400 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 394 / 1e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 394 / 1e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30840 394 / 2e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 393 / 2e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037796 [exp] 531 / 0 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 513 / 0 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 506 / 1e-180 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 504 / 9e-180 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 491 / 1e-174 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 487 / 3e-173 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 481 / 8e-171 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 474 / 4e-168 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 472 / 2e-167 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 481 / 3e-171 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 453 / 5e-160 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 453 / 6e-160 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 432 / 2e-151 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 415 / 7e-145 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 409 / 1e-142 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 358 / 1e-122 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 353 / 2e-120 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 342 / 8e-116 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 340 / 3e-115 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021943 pacid=23158013 polypeptide=Lus10021943 locus=Lus10021943.g ID=Lus10021943.BGIv1.0 annot-version=v1.0 ATGACCTCCTCCGCATCTCCAGACTGTTTGTACGATCGGCTGGCGGAGCTGAAAGCATTCGACGAAACAAAAGCCGGAGTCAAAGGTCTCGTCGACGCCG GAATAAAAAATATCCCTCGCATCTTCCACGCGCCGCCTCACTTTCTCGACACAGTCTCATCGCCGACGACGACGACGACGACCCTCTCAGCCGACGATTC ACCAAACTTCTCTTTCCCGATCATTGATCTGGAAGGCGGAGGCGGCCGAGACACGGAGAAGCGGAAGAAGATGGTTGACGAAGTCAAAGCGGCGGCGGAG AATTGGGGGTTCTTCGAAGTGGTGAACCACGGAATCCCGGAGAGCGTACTGGATGAGATGAAAGCAGGAGTAAGAAGGTTTTACGAGCAGGATCTTGAGC AGAAGAAGGAATTCTTCAGTCGCGACCCGACCCGAAGAGTTTATTATAACAGCAACTTCGATTTGTACAGTGCTCCCGTTACTAACTGGAGGGATTCGGT TATGCTTCAGATGGCTCCTTCCCCTCCAACCCCTGAAGAATTGCCTGCCTGCTCCAGGAAGATTGTGATGGAGTACACTAAGGAATTGTTCAAATTGACA GAGCTAATCTTTGAATTGCTCTCGGAAGCTTTGGGTTTGGACTGTAATTACTTGAAAGAAATAGACTGTGCAAAAGGATTATACATGGCATGCCATTATT ATCCAGCTTGCCCACAGCCAGAGCTTACTCTGGGATCAACCAAGCATACAGATTCTGATTTCATCACCGTGTTATTACAAGATCATATCGGAGGGCTTCA GGTTTTTCATCAGAATCAGTGGATCGATGTGCCCCCGCTGCCAAATAATCTAGTGATCAACATCGGAGACCTTCTTCAGCTGATATCGAACGACAAGTTT AAAAGTGTGGAGCACAGGGTGATGGCGAAGAATGTCGGGCCAAGGGTGTCTGTTGCATCATTTCTCACTACAGGGTTTACATCTAATGCAAGAGTTTATG GCCCTATAGAAGAGTTGTTGTCAGTTGATAATCCTCCGAAATATAGAGAAACAACAATCCTAGATTTCACTACCCAGTTCTACAAAAAGGGTTTAGATGG TAACTCGGCTCTGTTATACTTCAAAATATGA
AA sequence Show only first row Show all	>Lus10021943 pacid=23158013 polypeptide=Lus10021943 locus=Lus10021943.g ID=Lus10021943.BGIv1.0 annot-version=v1.0 MTSSASPDCLYDRLAELKAFDETKAGVKGLVDAGIKNIPRIFHAPPHFLDTVSSPTTTTTTLSADDSPNFSFPIIDLEGGGGRDTEKRKKMVDEVKAAAE NWGFFEVVNHGIPESVLDEMKAGVRRFYEQDLEQKKEFFSRDPTRRVYYNSNFDLYSAPVTNWRDSVMLQMAPSPPTPEELPACSRKIVMEYTKELFKLT ELIFELLSEALGLDCNYLKEIDCAKGLYMACHYYPACPQPELTLGSTKHTDSDFITVLLQDHIGGLQVFHQNQWIDVPPLPNNLVINIGDLLQLISNDKF KSVEHRVMAKNVGPRVSVASFLTTGFTSNARVYGPIEELLSVDNPPKYRETTILDFTTQFYKKGLDGNSALLYFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021943 [exp]	0	1
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	3.2	0.8502
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	6.0	0.8343
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	6.0	0.8428
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	7.2	0.8404
AT1G36980			unknown protein		Lus10037355 [exp]	9.2	0.8432
AT5G02090			unknown protein		Lus10024357 [exp]	10.7	0.8387
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	15.9	0.8316
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	16.3	0.7757
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	20.6	0.8292
AT5G35460			unknown protein		Lus10017161 [exp]	20.8	0.8067

Compare expression of checked genes

Lus10021943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.