Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19010 882 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT3G18040 663 / 0 ATMPK9 MAP kinase 9 (.1.2) AT2G42880 655 / 0 ATMPK20 MAP kinase 20 (.1) AT1G73670 648 / 0 ATMPK15 MAP kinase 15 (.1) AT3G14720 632 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G18150 625 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT1G53510 611 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT2G01450 597 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 315 / 1e-102 ATMPK4 MAP kinase 4 (.1) AT2G43790 307 / 4e-99 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041234 [exp] 1095 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 651 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10013702 [exp] 630 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 623 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10021784 [exp] 619 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 610 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 452 / 2e-154 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10018127 [exp] 323 / 1e-105 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10036136 [exp] 320 / 2e-104 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029700 [exp] 976 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 972 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.002G059900 [exp] 677 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 677 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.011G102500 [exp] 668 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.012G048600 [exp] 667 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 664 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.001G381300 [exp] 640 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.008G130000 [exp] 634 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.010G112200 [exp] 633 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021945 pacid=23158002 polypeptide=Lus10021945 locus=Lus10021945.g ID=Lus10021945.BGIv1.0 annot-version=v1.0 ATGCATATTCAGCAAAGTATAACACGCTTCTTTGATTCCATACAGTCTGTGGAGGTTGACTTTTTCACAGAGTATGGTGAGGGGAGCCGGTACAAGATAG AAGAAGTTATTGGAAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGACACACACACGGGAGAGAAGGTTGCTATTAAGAAAATCAATGATATCTTTGA ACATGTCTCTGATGCCACTCGCATCCTTCGAGAAATTAAACTTCTAAGGCTTCTCCGCCATCCAGATATAGTGGAGATCAAGCATATTCTGTTGCCTCCA TCTAGAAGGGAATTTAAGGACATCTATGTAGTTTTTGAGCTGATGGAGTCTGATCTACACCAAGTTATCAAAGCAAATGATGATCTTACGCCTGAACACT ACCAGTTCTTTCTCTATCAGCTGCTCCGGGGTCTGAAATACATTCACACTGGTGAGGAGCTTGATTACCTTGATATCTCAAGTGTCGAACTTCATCATCA TACACTTTCTTGTGCAATAGTTGCAGAAAAGGATCTAAAGCCCAAAAATATCTTGGCTAATGCTGATTGCAAACTGAAGATTTGTGACTTCGGTCTTGCA AGAGTAGCCTTTAATGACACTCCCACAGCTATTTTCTGGACGGATTATGTTGCAACGAGATGGTATAGGGCTCCGGAATTGTGTGGGTCATTTTTCTCTA AGTACACACCAGCAATAGACATTTGGAGCATTGGATGCATCTTTTCTGAACTTTTGACTGGGAGGCCTCTATTCCCTGGGAAAAATGTAGTCCATCAGTT AGATTTGATGACTGATCTGTTGGGAACACCATCTGCTGAAGCAATTGCGAGGGTTCGCAATGAGAAAGCTCGGAGATACCTTAGTAACATGCGGAAGAAG AAGCCAATTCCGTTTACTCATAAGTTCCCTCATGCAGATCCCTTAGCACTTCGGTTGTTAGAGAAAATGCTAGCATTTGAACCCAAAGATCGGCCCACTG CTGAAGAGGCTCTAGCAGATCCATATTTTAGAGGTTTGGCAAAAGTTGAAAGAGAGCCTGCTGCTCAACCTGTTACTAAAATGGAGTTTGAATTTGAGAG GCGAAGGATAACCAAAGAGGATGTTAGAGAACTCATTTATCGAGAAACACTGGAATACCATCCAAAAATGCTGAAAGAATTCTTGGAAGGCTCAGAACCG ACAGGCTTCATGTATCCAAGTGCTGTTGACCATTTCAAGAAGCAATTTGCTCATCTCGAGGAGCATTATGGGACTGGTACTCCACCACAGAGACAGCATG CATCATCGTTGCCAAGGGCCTGTGTGTTATACTCTGATAATAGAGTCCAGAGCTCGGCACAGGTAACGAATGATCTTGCTAAATGTTCTATCAAAGATAT AGAGAAGCCACATATGGACAAGACCGCCGTTGTCCCAATGACAAGGCTTCCCATTCAAGTGCCTCAAAGTATTCAAGCTGGTCCTGCTCGACCGGGAAAA GTTGTTGGTTCTGTACTGCGATACAACAACTGTGCCACAGCATCAGATACCGTGGACCAGCGAAGAATGATCAGAAATCCTTCTGCCACTTCTCAATATA CCTCTGCAAATGGTTCATATCCAAGAACAAACGCATCCTGCAAAAATGAGAGGGGAGAAGATGAAGGAATCGAAAGGCCTGTTGGATTGCAGCCGAAACC CCAATTCATGGCTAGGAAAGTTTCTGCCGCTCAAGGAGGACCAGGAAGTCAATGGTATGGATGA
AA sequence Show only first row Show all	>Lus10021945 pacid=23158002 polypeptide=Lus10021945 locus=Lus10021945.g ID=Lus10021945.BGIv1.0 annot-version=v1.0 MHIQQSITRFFDSIQSVEVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPP SRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTGEELDYLDISSVELHHHTLSCAIVAEKDLKPKNILANADCKLKICDFGLA RVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFSELLTGRPLFPGKNVVHQLDLMTDLLGTPSAEAIARVRNEKARRYLSNMRKK KPIPFTHKFPHADPLALRLLEKMLAFEPKDRPTAEEALADPYFRGLAKVEREPAAQPVTKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEFLEGSEP TGFMYPSAVDHFKKQFAHLEEHYGTGTPPQRQHASSLPRACVLYSDNRVQSSAQVTNDLAKCSIKDIEKPHMDKTAVVPMTRLPIQVPQSIQAGPARPGK VVGSVLRYNNCATASDTVDQRRMIRNPSATSQYTSANGSYPRTNASCKNERGEDEGIERPVGLQPKPQFMARKVSAAQGGPGSQWYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	0	1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	2.2	0.8170
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10023878 [exp]	6.1	0.7228
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	8.9	0.7694
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	9.4	0.7632
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	11.1	0.7366
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	11.2	0.7583
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	13.2	0.7761
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	16.0	0.7044
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	16.9	0.7927
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	17.7	0.7582

Compare expression of checked genes

Lus10021945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.