Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06190 554 / 0 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 523 / 0 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G39760 411 / 3e-142 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G03740 380 / 5e-129 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G21010 357 / 4e-121 ATBPM5 BTB-POZ and MATH domain 5 (.1) AT3G43700 355 / 3e-120 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G13060 57 / 2e-08 ABAP1 ARMADILLO BTB protein 1 (.1) AT5G19330 52 / 7e-07 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT2G04740 51 / 8e-07 ankyrin repeat family protein (.1) AT2G42480 50 / 2e-06 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041235 [exp] 416 / 2e-146 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10004701 [exp] 407 / 3e-140 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 407 / 4e-140 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10003365 [exp] 388 / 1e-131 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 387 / 2e-131 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10034070 [exp] 55 / 1e-07 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 52 / 4e-07 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 52 / 8e-07 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 51 / 1e-06 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200700 [exp] 613 / 0 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.010G029500 [exp] 609 / 0 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G059600 [exp] 431 / 3e-150 AT2G39760 549 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.010G199200 [exp] 420 / 1e-145 AT2G39760 528 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Potri.009G156500 [exp] 394 / 9e-136 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.019G039500 [exp] 386 / 4e-132 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 382 / 7e-131 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 189 / 3e-57 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.005G210000 [exp] 57 / 1e-08 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 56 / 3e-08 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10021946 pacid=23158061 polypeptide=Lus10021946 locus=Lus10021946.g ID=Lus10021946.BGIv1.0 annot-version=v1.0 ATGGACGCAATTAGGGTTTGCAGCAGTGATCTCCCCAATAATCCCTGCTCGTCGACGCAAACCCCTCCGACGGTCACGTCCTCTACCTCGAGGAACGACA CCGTCAATGGCACCCACGAGTTCGACATCAGTGGCTACACGCTGTCCAAGGGGATGGGCGTCGGCAAGTACATCGCGTCGGAGACTTTCGTCGTCGGTGG GTATGAGTGGGCGATCTACTTTTATCCCGACGGTAAGAGCCCCGATGATAACGGGAATTATGTATCTTTGTTCATTGCTCTGGCCAGCGATGGGACCGAT GTCAGGGCGTTGTTTGAGCTGACTCTGATTGATCAGAGTGGGAAAGAACGGCATAAGGTTCATAGCCATTTTGGGAGAAACCTGGAGACGGGTCCTTATA CCCTCAAATATAGAGGGAGTATGTGGGGTTATAAACGATTTTTCAAAAGAACTCAACTTGAGACTTCAGATTACCTGAAAGACAATAAGCTTGTGATCCG CTGTTGTGTTGGTGTTGTTAAATCACAGACAGTAGGACCTAGAACCTACACAATTGCCGTGCCACCTTCTGACATTGGTCTTCATTTTGGAACGCTCCTG GAAAGTGGAAAGGGGTCTGATGTAAATTTTGAAGTTGATGGAGAGATGTTTTCTGCACACAAGTTGGTTCTTGCTGCACGCTCCCCAGTCTTCAGGGCAC AACTTTTTGGTCCAATGAAGGACCAAAATACTTCCTCCTTGAAAGTTGAAGATGTGGAAGCCCCAGTTTTTAAGGCTCTACTACACTTCATCTACTGGGA TGCCCTGCCAGACATGGAGGAACTTGGTGTGAACTCCAAATGGGCAGCTACATTGATGGCACAGCATCTACTTGCAGCAGCAGACCGCTATGCACTCGAG AGGCTCAGATTGCTGTGTGAAACAACACTTTGTGAGGATGTTGCTGTAGATACGGTTGCAACGACTCTAGCCTTGGCAGAGCAGCATCAATGCCTCCAAT TAAAAGCTGTGTGCCTCAAATTCATTGCATTACCCGAAAATCTGAAAGCTGTTATGAAGACAGATGGATTTGAGTACCTGAAGCAAAGCTGCCCTAGTGT TATCACAGAGCTGTTGCAATACGTAGCCAAGGTTGGTGAGCATTCTGCAGTTGCTGCTTGCACTCATGGGATTGAATGCTTAGACGGTGATATAAACGGG AGACGGGTGAAGCAAAGGATCCATTGA
AA sequence Show only first row Show all	>Lus10021946 pacid=23158061 polypeptide=Lus10021946 locus=Lus10021946.g ID=Lus10021946.BGIv1.0 annot-version=v1.0 MDAIRVCSSDLPNNPCSSTQTPPTVTSSTSRNDTVNGTHEFDISGYTLSKGMGVGKYIASETFVVGGYEWAIYFYPDGKSPDDNGNYVSLFIALASDGTD VRALFELTLIDQSGKERHKVHSHFGRNLETGPYTLKYRGSMWGYKRFFKRTQLETSDYLKDNKLVIRCCVGVVKSQTVGPRTYTIAVPPSDIGLHFGTLL ESGKGSDVNFEVDGEMFSAHKLVLAARSPVFRAQLFGPMKDQNTSSLKVEDVEAPVFKALLHFIYWDALPDMEELGVNSKWAATLMAQHLLAAADRYALE RLRLLCETTLCEDVAVDTVATTLALAEQHQCLQLKAVCLKFIALPENLKAVMKTDGFEYLKQSCPSVITELLQYVAKVGEHSAVAACTHGIECLDGDING RRVKQRIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10021946 [exp]	0	1
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	11.7	0.8300
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10004174 [exp]	12.5	0.8518
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	15.5	0.8454
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	19.8	0.8428
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	21.3	0.8437
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	25.0	0.8377
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	28.8	0.8360
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	37.5	0.8406
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	39.2	0.8322
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	39.3	0.8433

Compare expression of checked genes

Lus10021946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.