Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18970 161 / 5e-51 AWPM-19-like family protein (.1) AT1G29520 81 / 8e-20 AWPM-19-like family protein (.1) AT5G46530 79 / 6e-19 AWPM-19-like family protein (.1) AT1G04560 42 / 3e-05 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041238 [exp] 228 / 2e-77 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1) Lus10001116 [exp] 191 / 5e-63 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10015255 [exp] 81 / 1e-19 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 81 / 1e-19 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 81 / 1e-19 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10011973 [exp] 79 / 6e-19 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10014456 [exp] 48 / 4e-07 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 48 / 5e-07 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200000 [exp] 176 / 8e-57 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Potri.008G200300 [exp] 150 / 7e-47 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 83 / 2e-20 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 81 / 1e-19 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 48 / 4e-07 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [flax] [poplar] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Lus10021949 pacid=23158039 polypeptide=Lus10021949 locus=Lus10021949.g ID=Lus10021949.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGAGCATCTAGATCAGCATCCATGCTACTCTTGATCCTCAACATTATTCTCTACTTCATCATCGTTGTCGTTGCTTCATGGGCTGTGAATC ATGCCATTCTCCGATCACACGAAGCAGCGTCTGTTCTATCGATCCCAGCTCGAATCTTCCCCATATTCTTCCCAATGGGAAACATGGCTACCGGAGTCTT TGTCATAATAGCCCTCCTGGCCGGAATCGTGGGGATCACCACATCATTCGTCGGAATCCAAAATATTCTCGTGTCGAATGCAGCTAATCTGCACGCTGCA GCTTCCTCTTCATTGGCATCCTTGGCACTCACTCTTCTAGCCATGGGGTTGGCTTGCAAAGAGATAGACATAGGATGGACTGATGCAAACTTGAGGACTC TGGAAGTTGTGACCATAATAGTAAGTGGAACCCAGTTGCTATGCACCGGAGCACTCCATGCCGGAGTTGAAGAGGTGGAAGCGCGGCGGAGGATTCTCGG CTAG
AA sequence Show only first row Show all	>Lus10021949 pacid=23158039 polypeptide=Lus10021949 locus=Lus10021949.g ID=Lus10021949.BGIv1.0 annot-version=v1.0 MASGASRSASMLLLILNIILYFIIVVVASWAVNHAILRSHEAASVLSIPARIFPIFFPMGNMATGVFVIIALLAGIVGITTSFVGIQNILVSNAANLHAA ASSSLASLALTLLAMGLACKEIDIGWTDANLRTLEVVTIIVSGTQLLCTGALHAGVEEVEARRRILG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	0	1
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	1.7	0.9529
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	2.4	0.9609
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	2.8	0.9553
AT5G19875			unknown protein		Lus10034527 [exp]	6.0	0.9299
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	7.3	0.9478
AT4G16400			unknown protein		Lus10039068 [exp]	7.4	0.9396
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	7.5	0.9433
AT1G23530			unknown protein		Lus10030608 [exp]	7.7	0.9521
					Lus10041944 [exp]	8.8	0.9222
AT1G75720			Plant protein of unknown funct...		Lus10024335 [exp]	9.5	0.9358

Compare expression of checked genes

Lus10021949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.