Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15470 251 / 2e-84 Bax inhibitor-1 family protein (.1) AT1G03070 170 / 9e-53 Bax inhibitor-1 family protein (.1.2) AT4G02690 157 / 8e-48 Bax inhibitor-1 family protein (.1) AT3G63310 157 / 1e-47 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) AT4G14730 143 / 2e-42 Bax inhibitor-1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041240 [exp] 340 / 2e-119 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1) Lus10004077 [exp] 163 / 6e-50 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2) Lus10022085 [exp] 157 / 1e-47 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2) Lus10042631 [exp] 155 / 6e-47 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2) Lus10004078 [exp] 45 / 1e-05 AT4G02690 85 / 2e-19 Bax inhibitor-1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028900 [exp] 283 / 4e-97 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1) Potri.008G199200 [exp] 282 / 1e-96 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1) Potri.002G049000 [exp] 166 / 2e-51 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2) Potri.005G214000 [exp] 161 / 2e-49 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2) Potri.008G157100 [exp] 158 / 3e-48 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1) Potri.005G213900 [exp] 116 / 9e-32 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0453 [flax] [poplar] Apoptosis-Inhib PF01027 [flax] [poplar] Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence Show only first row Show all	>Lus10021950 pacid=23158018 polypeptide=Lus10021950 locus=Lus10021950.g ID=Lus10021950.BGIv1.0 annot-version=v1.0 ATGTACGGATTCACAAGATTGTCGGACAAGGAGCTAGGAAAGGAGGAGCTTGATCTTGAGGCAGGCAACGGCGAGACTCTCTACCCTGGGCTAGGGGTGG GCGAGAGCCAGCTCCGATGGGGATTGATCCAGAAGGTTTACGGCATCTTGGCTGCTCAGCTCGTCCTCACAACCATCGTCTCCTCCTTCACCGTCCTCTA CGCTCCCGTCAACGATCTCCTCAAGGGGAGCCCCGGTCTCCTCTTGTTCCTCTGCGTCATCCCCTTCGTCCTGATATGGCCCCTGCACATCTATCACCAG AAGCATCCTACTAACCTGATTTTGCTGGGTCTCTTCACCATATCTCTGAGTTTCTTGGTTGGGGCAAGTTGTGCCAACACAGATGGGAAAATTGTGCTGG AGGCATTGATCCTGACCTCTGCTGTTGTCTGCTCTCTAACTGCATACACCTTCTGGGCTGCCAAGAGAGGCTATGATTTCAACTTCCTGGGACCCATTTT GTTCACCAGCCTTATGATACTCATCCTGACAAGCTTCATCCAGGTGTTCTGCCCGTTGGGTTCAACATCTACTGCAGTGATTGGTGGGATTAGTGCCTTG GTGTTCTCCGTCTGTACATCCTACTTTCTCGGATATACCACTGCTGATGGTTTTGTAATTTGCTTTTAG
AA sequence Show only first row Show all	>Lus10021950 pacid=23158018 polypeptide=Lus10021950 locus=Lus10021950.g ID=Lus10021950.BGIv1.0 annot-version=v1.0 MYGFTRLSDKELGKEELDLEAGNGETLYPGLGVGESQLRWGLIQKVYGILAAQLVLTTIVSSFTVLYAPVNDLLKGSPGLLLFLCVIPFVLIWPLHIYHQ KHPTNLILLGLFTISLSFLVGASCANTDGKIVLEALILTSAVVCSLTAYTFWAAKRGYDFNFLGPILFTSLMILILTSFIQVFCPLGSTSTAVIGGISAL VFSVCTSYFLGYTTADGFVICF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	0	1
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	1.0	0.8889
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	2.0	0.8823
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	3.9	0.8519
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	8.1	0.8812
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	10.2	0.8397
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	15.0	0.7879
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	16.3	0.8303
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	19.9	0.8556
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	21.2	0.8058
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	22.4	0.8466

Compare expression of checked genes

Lus10021950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.