Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18930 331 / 2e-112 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G25570 244 / 2e-78 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 238 / 1e-75 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 223 / 3e-70 Adenosylmethionine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041241 [exp] 610 / 0 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10040973 [exp] 255 / 5e-82 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 253 / 1e-81 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 247 / 1e-79 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10000156 [exp] 244 / 2e-77 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 244 / 3e-77 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 239 / 1e-75 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198800 [exp] 426 / 3e-150 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 416 / 3e-146 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.018G101500 [exp] 253 / 2e-81 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.017G108800 [exp] 243 / 7e-78 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 241 / 3e-77 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 226 / 2e-71 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10021951 pacid=23158044 polypeptide=Lus10021951 locus=Lus10021951.g ID=Lus10021951.BGIv1.0 annot-version=v1.0 ATGGCTGCCATTGGATTTGAAGGCTTTGAGAAGCGCCTTGAGCTTCACTTCCATTTTCTTCATCCGTCGTCGTTGGGTCTGAGGCTACTTCTGGATTTCG ATTCCCTGGTGGAAGTCCTAAACGCCGTCCAATGCACCGTCGTTGCTGCCGTCGGGAACCGTTACTTCGATGCTTACGTGTTGTCCGAATCGAGCCTATT CGTATACCCGACTAAGATCATCATCAAGACTTGTGGGACCACACAGCTCCTCAAATCCATCCGTCCGTTGATCCGACTCGCTGATTCCTCAGCTTTGTCA CTCTGCACCCTCAGGTACACCCGCGGCAGCTTCATCTTTCCTGAATCACAGCCCTCTCCGCACACCAGCTTCGCCGAGGAGGCCGATTACATCCGCCGTC GACTCCCGGCGTCCCTCCGCTGCCGGAAAGCCTCCGTCATGCCTTCCAAGCTCACTTCCCATTCCTGGCACGTGTTCACCGCAACCAGTACTGATCAAAC CGAACCGGATAATAAACCGATTTATACGGTGGAAGTTTGCATGACCGATCTGGACCGGGTTCAGGCCAAGAAGTTCTTCCAGCCGCCAGGGAAGGGGAAA AACGGCAACATTCCGGGGAAGGAAATGACGAAGCTGACCGGGATTGGAGAGATCAATCCCCGGGCGATTATTTGTGATTTTGGGTTCGACCCGTGTGGGT ACTCGATGAATGGGATCGACCAAGAATGCTACTCGACCATCCACGTCACTCCGGAGGAAGGTTACAGCTATGCCAGCTACGAGTGGGTGGGGTCAGCTTC CGATGACGTGGATGATCTCGCGGAAGTGTTGAAGAGAGTGGTCCGAGTCTTTCGGCCTGGGACCATGTCGGTATCCACCACTGGAGCGACACGTGAGGTG TGGGGCCGGGTCGGGCATGCATTGGAAGGGATGAAACGACGTAGTTGTGCAGTGGATGAATATCCGGCGTTTGGGACCGTCGTGTTTCAAACATTCACAG CCGCCGCCGGCCGACGGAAGGAAGTAGGGGATGGTTTAATGTTTATTAATTAG
AA sequence Show only first row Show all	>Lus10021951 pacid=23158044 polypeptide=Lus10021951 locus=Lus10021951.g ID=Lus10021951.BGIv1.0 annot-version=v1.0 MAAIGFEGFEKRLELHFHFLHPSSLGLRLLLDFDSLVEVLNAVQCTVVAAVGNRYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIRLADSSALS LCTLRYTRGSFIFPESQPSPHTSFAEEADYIRRRLPASLRCRKASVMPSKLTSHSWHVFTATSTDQTEPDNKPIYTVEVCMTDLDRVQAKKFFQPPGKGK NGNIPGKEMTKLTGIGEINPRAIICDFGFDPCGYSMNGIDQECYSTIHVTPEEGYSYASYEWVGSASDDVDDLAEVLKRVVRVFRPGTMSVSTTGATREV WGRVGHALEGMKRRSCAVDEYPAFGTVVFQTFTAAAGRRKEVGDGLMFIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	0	1
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	6.0	0.7643
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	6.5	0.6959
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	7.7	0.7441
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	10.3	0.7703
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	17.2	0.7142
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	21.2	0.6549
					Lus10004020 [exp]	22.4	0.6870
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	25.7	0.7252
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	26.3	0.6787
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	30.7	0.7435

Compare expression of checked genes

Lus10021951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.