Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 422 / 1e-147 Protein phosphatase 2C family protein (.1) AT2G20050 341 / 1e-107 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT5G26010 96 / 5e-22 Protein phosphatase 2C family protein (.1) AT5G27930 94 / 4e-21 Protein phosphatase 2C family protein (.1.2) AT5G01700 92 / 8e-21 Protein phosphatase 2C family protein (.1.2) AT3G05640 91 / 4e-20 Protein phosphatase 2C family protein (.1.2) AT4G03415 85 / 8e-18 Protein phosphatase 2C family protein (.1.2) AT1G03590 84 / 3e-17 Protein phosphatase 2C family protein (.1) AT5G36250 81 / 3e-16 Protein phosphatase 2C family protein (.1) AT4G32950 79 / 3e-16 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041242 [exp] 701 / 0 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 556 / 0 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 545 / 0 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 322 / 2e-100 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 219 / 1e-63 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10029874 [exp] 97 / 3e-22 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 89 / 2e-19 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 87 / 1e-18 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 86 / 3e-18 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 486 / 6e-172 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 483 / 3e-170 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 338 / 1e-106 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.013G012200 [exp] 95 / 2e-21 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G232700 [exp] 88 / 4e-19 AT5G26010 318 / 7e-108 Protein phosphatase 2C family protein (.1) Potri.005G021900 [exp] 88 / 4e-19 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 87 / 5e-19 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006100 [exp] 87 / 1e-18 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 85 / 5e-18 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 85 / 9e-18 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10021952 pacid=23158021 polypeptide=Lus10021952 locus=Lus10021952.g ID=Lus10021952.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTTCACGGAAGGTGCTGCATCCGTTACCCATCCTCGTCGGATGGCGGAGGAGGTTCGAGGGATTACCGTCAATTAGGAGACGCAGGGAATA AAAGCAAGCACTTGCTCACACAGAGGTCTCTGGAAACTATATCTGTTCCTTCTCGCAACTTTAGGTTGCAGTACTCTGTTTTGACTCAGAGGGGTTACTA TCCCGACCAGCCGGATAAAGAGAACGAGGATAGTTTCGTCGTCAAGACACAGCTCCAAGGTAATCCGGACATTCATTTCTTCGGTGTGTTCGACGGGCAC GGCCAATTCGGTGCGCAGTGTTCCACTTTTGTTAAGAACAGGCTAGTTGAGATACTAGAGAACGATTCCACTCTGTCGGATGACCCCATTGAGGCCTACA ACTCGGCATTTTCCACGACAAATTCCGACCTCCATAGAAGTGAGATCGACGATACAATGAGTGGGACGACTGCTATCACTGTTCTTGTCGTTGGGGATAT GATCTACGTCGCGAATGTGGGCGATTCGAGGGCTGTGATGGGTGTTAGGAGGAGGGATAGGATTGTGGCGGAGGATTTGTCGTGTGATCAAACTCCATTC AGGAAAGATGAGTGTGAAAGGGTGAAGCTTTGTGGGGCTAGAGTGTTGAGTGTTGATCAAGTGGAAGGGCTTAAGGATCCGGATGTGCAGTCGTGGGGAG ACGAGGAAAGCGATGGAGATGATCCTCCTAGGTTGTGGGTGCAGGATGGCATGTACCCTGGTACGGCATTTACGAGAAGTGTAGGTGACAGTACTGCCGA GAGGATTGGTGTTATCGCTGAGCCGGAAATGACTGTGGCTGCAAGATACGGGGATCCCCGGGATGCATGTTCTGCAATTGCTGGAGAGTCATACAAACTT TGGCTGGAACATGAAAATCGCACAGATGATATTACAATCATAATTGCCCAGATTCAAGACTTGATTACTTCAGCTGGTGACGATAGGGACAGAATCACAG TGACTAATAGAATTGAGGCCAAAAGCAAGGGATCTGCTGATCTTTCTGTTCATACCGAGTCGGATATGTATCAGTCAATAAGAACAGAATACTTGGACAT GCAAGGTACAGCCAGTCGAAGCGAAGTAGTCGTTCCAGATCCCCACCGGAGGCCCTTTGAAGTGGTCAGTTACCTCCATCCTTCTGTAGGCTAA
AA sequence Show only first row Show all	>Lus10021952 pacid=23158021 polypeptide=Lus10021952 locus=Lus10021952.g ID=Lus10021952.BGIv1.0 annot-version=v1.0 MGCVHGRCCIRYPSSSDGGGGSRDYRQLGDAGNKSKHLLTQRSLETISVPSRNFRLQYSVLTQRGYYPDQPDKENEDSFVVKTQLQGNPDIHFFGVFDGH GQFGAQCSTFVKNRLVEILENDSTLSDDPIEAYNSAFSTTNSDLHRSEIDDTMSGTTAITVLVVGDMIYVANVGDSRAVMGVRRRDRIVAEDLSCDQTPF RKDECERVKLCGARVLSVDQVEGLKDPDVQSWGDEESDGDDPPRLWVQDGMYPGTAFTRSVGDSTAERIGVIAEPEMTVAARYGDPRDACSAIAGESYKL WLEHENRTDDITIIIAQIQDLITSAGDDRDRITVTNRIEAKSKGSADLSVHTESDMYQSIRTEYLDMQGTASRSEVVVPDPHRRPFEVVSYLHPSVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	1.0	0.9073
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	2.2	0.8489
AT4G28100			unknown protein		Lus10018524 [exp]	4.0	0.8614
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	6.5	0.8468
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	12.3	0.8511
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	13.3	0.8326
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	25.8	0.8316
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	29.2	0.8336
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	29.8	0.8546
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	34.9	0.8484

Compare expression of checked genes

Lus10021952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.