Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 173 / 3e-46 RING/U-box superfamily protein (.1.2) AT1G03365 150 / 2e-38 RING/U-box superfamily protein (.1) AT2G35330 109 / 5e-25 RING/U-box superfamily protein (.1.2) AT1G32530 90 / 1e-18 RING/U-box superfamily protein (.1) AT3G53410 48 / 1e-05 RING/U-box superfamily protein (.1) AT1G68820 45 / 0.0001 Transmembrane Fragile-X-F-associated protein (.1) AT4G24204 43 / 0.0001 RING/U-box superfamily protein (.1.2.3) AT5G19080 44 / 0.0003 RING/U-box superfamily protein (.1) AT3G09770 43 / 0.0004 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT1G30860 43 / 0.0005 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041245 [exp] 344 / 1e-108 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 327 / 5e-102 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 313 / 7e-97 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 281 / 6e-85 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 101 / 8e-23 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 99 / 6e-22 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 51 / 2e-06 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 47 / 2e-05 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10000533 [exp] 47 / 3e-05 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 254 / 9e-75 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 251 / 5e-74 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 106 / 5e-24 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 91 / 6e-19 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.014G138000 [exp] 50 / 2e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.005G036400 [exp] 48 / 1e-05 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 47 / 1e-05 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.013G025400 [exp] 46 / 6e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.001G168700 [exp] 45 / 0.0001 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.010G070750 [exp] 44 / 0.0002 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021953 pacid=23158048 polypeptide=Lus10021953 locus=Lus10021953.g ID=Lus10021953.BGIv1.0 annot-version=v1.0 ATGTCATCAATGGTTGCTAAGGCCAGTAGTAGCTGCGGGACTCAAGTCTCATCTTTGATATCTGTCCCAGGAAAAGGGAGTAGTTACAAAAGAAAATTCC GGGCTGATCCTCCGATTGTTGATGCTGAAAAGATAACCCCTTCACCTCAAAATGAGTGTCCTAGTTATCAATTCTCTGCGGAGAAGTTTGAACCTACCGC AGTTCATGGATTGACCACTGCCTGTGACCTGTGTGGTGTCAGTCAAGATTATACAGATGGGTTGAAGCTAAACCTTGGGTTATCTAGTCCTGTAAGTTCA TCTGAGGTTTTGCCTAGCCAGCCTAGAGAGGAATTTGCATCGGAAGAATCACATGATCTTGATTGGAGTCATATTACAGAATCCCAATTGGAAGAGCTTG TTTTGAGCAATTTGAATGCGATATTCAAAAGTGCAATTAAAAAAATCGTTGCATGTGGGTTTACTGAAGAAGTTGCTACAAAGGCGATAGATTTACCGAA GAAGTGGCTACGAAGGCGATTTTCAGACAAGCACAAATATAATCTTGAGACAAGCACCAATATCCCAAAGGTTGTCAAGGTGACAAAATCAAAGAATTCT GTTGCTCTTAATGGCCAAGTATCAGATAAGGAGGGATCAACTTCTGCATTTGATCCTGTAGATAAATTCTTCAACATTGCAGGACAATCTCAGTCAACTG TAATGGAAGAAAAGTTTACAGTTACAAAAAAGGTGCATTCTGGTAGCACCAAGAGAGAATTCATTCTCAGGCAGAAGACATTACATCTTGAGAAAGGCTA CCGAACTTACGGGTCTAAAGGTTCATTGAGATCTGGGAAATTGAGTGGATTGGGTAATTTAGTTTTAGACAAGAAACTGAAGTCTATTTCAGATTCTACT TCCGTTAATATCAAGAATTCCTCCATAAGAATAAGTAAGGCCGTCGGAGCTTATACCCCTCAAGATGGTGGGAATCAAAGCCTTCCAATCAATTCCGGAC TGTCATCCTCAGTCTCGTTTAGTTTGGAGGGTCCTAGTTCTGTTCCTTTTTGTTCTAAAACCAACATCTTGCCGGGTCGATGGCAGCAGGAAGAGAAGGC AAATGAAGAGCTGCTTCTGCAAGCCGGCGAAATACGAAAAGAAAGAGACAGAATTGAGGCTTCAACAAAATCTGAAGAGGATATGATGAAATTAAAGGCA GCAAACAGTCTTGAAAAGTACAAAGATGATATACAGAAGCTTGAGAAAGAGATATCCAAGCTCAGACTGAAGGTTGACTCATCAAAGATTGCTGCACTTC GGAGGGGGATCGATGGAAATCATGCAACCAAGGCTGCACAGAAGGAGAGGTGGACAAATTACGTCTCGGAATTAGCCACAGATCTCAGTGACTACTCGGA GAATGGAGGAGTTGAGCGAGAAAGGGAGTGTGTGATGTGCCTGTCAGAGGCGATGTCAGTGGTGTTCCTCCCTTGTGCACATCAGGTGGTATGCATATCA TGCAATGAGCTCCATGAGAAGAAAGGGATGAAAGATTGTCCTTCCTGCAGGAGCCATATCCTGCGGCGCATTCGAGTACGTAACGGTCGATCTTAG
AA sequence Show only first row Show all	>Lus10021953 pacid=23158048 polypeptide=Lus10021953 locus=Lus10021953.g ID=Lus10021953.BGIv1.0 annot-version=v1.0 MSSMVAKASSSCGTQVSSLISVPGKGSSYKRKFRADPPIVDAEKITPSPQNECPSYQFSAEKFEPTAVHGLTTACDLCGVSQDYTDGLKLNLGLSSPVSS SEVLPSQPREEFASEESHDLDWSHITESQLEELVLSNLNAIFKSAIKKIVACGFTEEVATKAIDLPKKWLRRRFSDKHKYNLETSTNIPKVVKVTKSKNS VALNGQVSDKEGSTSAFDPVDKFFNIAGQSQSTVMEEKFTVTKKVHSGSTKREFILRQKTLHLEKGYRTYGSKGSLRSGKLSGLGNLVLDKKLKSISDST SVNIKNSSIRISKAVGAYTPQDGGNQSLPINSGLSSSVSFSLEGPSSVPFCSKTNILPGRWQQEEKANEELLLQAGEIRKERDRIEASTKSEEDMMKLKA ANSLEKYKDDIQKLEKEISKLRLKVDSSKIAALRRGIDGNHATKAAQKERWTNYVSELATDLSDYSENGGVERERECVMCLSEAMSVVFLPCAHQVVCIS CNELHEKKGMKDCPSCRSHILRRIRVRNGRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	1.0	0.9182
AT4G03000			RING/U-box superfamily protein...		Lus10041244 [exp]	2.4	0.8334
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	3.0	0.8225
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	3.5	0.8163
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	6.0	0.7711
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10033909 [exp]	6.9	0.7213
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	8.4	0.7898
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	8.8	0.7957
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	11.2	0.7916
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	11.8	0.7297

Compare expression of checked genes

Lus10021953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.