Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 367 / 9e-114 RING/U-box superfamily protein (.1.2) AT1G03365 326 / 3e-98 RING/U-box superfamily protein (.1) AT2G35330 181 / 2e-47 RING/U-box superfamily protein (.1.2) AT1G32530 132 / 2e-31 RING/U-box superfamily protein (.1) AT3G53410 43 / 0.0008 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041246 [exp] 1392 / 0 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 1190 / 0 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 1166 / 0 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 271 / 6e-81 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 205 / 4e-58 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 198 / 1e-55 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 895 / 0 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 894 / 0 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 215 / 4e-59 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 195 / 3e-52 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021954 pacid=23157966 polypeptide=Lus10021954 locus=Lus10021954.g ID=Lus10021954.BGIv1.0 annot-version=v1.0 ATGGTTGCTAAGGCCAGTAGTAGCGGCGGGACTCAAGTGTCATCTTCGGTATCTGTCCCGGGAGAAGGGAGTAGGAACAAGAGAAAATTCCGGGCTGATC CTCCGACCGCCGTTGATGCTGAAGAGATAACCTCTTCGCCCCAAAACGGGTGTCCTAGTTATCAATTCTCTGCTGAGAAGTTCGAAGCTACCGAAGTACA TGGGCTGACCACTGCCTGTGACCTGTGTGGTGTCAGTCAAGATTCTATAGATGAGTTGAAGCTAAACCTAGGGTTATCTAGTCCTGTAAGTTCATGTGAG GTTTTGCCTAGTCAGCCTAGTGGGGAACTCGCGTTGGAAGAATCACATGATCCGGATTGGGGTCATATTACAGAGTCCCAATTGGAAGAGCTTGTTTTGA GCAATTTGAATGCGATATTCAAAAGTGCAATTGAAAAAATTGTGGCCTGTGGGTTTACTGAACAAGTGGCTACGAAGGCAATTTTGAGGTCTAGTGTTTA TGATGGGTCTAAGGACACAGTATCAAATATAGTTGATAATACTTTAGAGTTTCTCAGAAATGGTCAGGATATTGACCCTTCTAGAGAGCATTGTTTTGGT GACTTACAGCAATTCCAGAAGTATATTTTGGCTGAATTAGTTTGTTTGGTGAGGGAAGCTAGGCCTGTCTTCAGTACTGGGGATGCAATGTGGTGCCTTC TGATCTCTGACATGAATGTTTCTCATGCTTTTGCAACGGATGGTGATCCAATGATCAGTGGTTCAGCTGATGGGGCCTCACATGAGCCTTCTTGCTCTCC CCAACAAACACAAATAGAACCAAAATCTGAAGGTCCTGAATCAATTGATACTACCCCTTTGAAGCAAGTTCCCACAGTACCTTGTTCCCGTAATCTTGAG ACAAGCACCAATATCCCAAAGGTTGTCAAGGTGACAAAATCAAAGAATTCTGTTGCTCTTAATGGCCAAGTATCAGATAAGGAGGGATCAACTTCTGCAT TTGATCCTGTAGATAAATTCTTCAACATTGCAGGACCATCTCAGTCACATGTGATGGAAGAAAAGTTTACAGTTACAAGAAAGGCTGTTTCTGGCAGCAC CATGAGAGAATTCATTCTCAGGCAGAGGTCATCATTACATCTTGAGAAAGGCTACCGAACTTACGGGTCTAAAGGTTCATTGAGGTCTGGGAAATTGAGT GGCTTGGGTAATTTAGTCAAACTGAAGTGTGTTTCAGATTCTACTTCAGTTAATATCAAGAATTCCTCCATAAGATTAAGTATGGTAGTAGGAGCTTATA CCCCTCAAGATGGTGGGAATCAAAGCCTTCCAAACAATTCCAGACTCTCATCCCCAGTCTCATCTAGTCAGGAGGCTCCTAGTGCTGCTCCTTGTCCTAA ATCCAACATCCCCCGGGTATTACCCCCAACCAATGGCTTGCCTGCAAAACCTCCAGTCAGTGCTATACCAGGACTATTAACTGCAGACACTGAGCTTTCG CTTGCCCTCCCTGCGAAAAACAGCTCCAGTTTGGATTCTGTTGGATGTCATAATATTGCTACCTTGCCAATTGATATACCGTGGGTTCCTCAGGACAAGA AGGATGAGATGATTGTTAAGCTTCTTCCTAGAGTTCGAGTACTGCAAAATCAGCTTCAAGAATGGACTGAATGGGTGAATCAGAAGGTTATGCAGGCTGC TAGAAGGCTAAGCAAGGACAAGGCTGAACTTAAATTACTGAGACAAGAGAAAGAGGAAGTTGAACGGCTCAAGAAGGAGAAACAGACTTTAGAAGAAAAC ACCATGAAAAAGCTAAATGAAATGGAGAATGCCTTACGTAAGGCCAGTGGACAGGTGGAGAGAGCTAGTTCTGCTGTTCGTAGGCTTGAGGTGGAAAATG CTGAACTTCGGCAGGAAATGGAAGCTGCAAAACTACGTGCTGCAGAGTCAGCTGCTAGCTGTCAGGATGCATCAAAGAGGGAGAAGAAGACATTGATAAA ACTTCAGTCACAGGAGAAACAGAAAGGGCTGCTCCAGGAGGATCTTGGGACTGAAAAGCGCAAGGTTTCGATCCTGCTACATGATCTGGAGGTTGCCAAA CGAAAACAAGAGCAACGAGAGGGTAGATGGCAGCAGGAAGAGAAGGCAAATGAAGAGCTGCTTCGGCAAGCTGGTGAAACAAGAAAAGAAAGAGACAGAA TTGAGGCATCAACAAAATCTGAAGAGGATATGATGAAATTAAAGGCAGCAAACAGTCTTCAGAGGTACAAAGATAACATAGAGAAGCTTGAGAAAGAGAT ATCCAAGCTCAGACTGAAGGTTCACTCATCAAAGATTGCTGCTCTCCGGAAGGGGATCAACGAAAACCAAGCTACCAAGGCTGCAGATCTCAAAGGCAAT CCTACACAGAAGGAGAGGTGGACAAATTACGTCTCGGAATTAGGCACAGATCTTAGTGACTACTCGGAGAAGGGAGGAGTTGAGCGAGAAAGGGAATGTG TGATGTGCTTATCAGAGGCGATGTCAGTGGTGTTCCTCCCTTGTGCACATCAGGTGGTATGCACATCTTGCAATGAGCTCCATGAGAAGAAAGGGATGAA GGATTGTCCTTCTTGCAGGAGCCATTCTTGCAGGAGCCATATCCAGCGGCGCATTCGAGTTTGTAACGGTCGCTCTTAG
AA sequence Show only first row Show all	>Lus10021954 pacid=23157966 polypeptide=Lus10021954 locus=Lus10021954.g ID=Lus10021954.BGIv1.0 annot-version=v1.0 MVAKASSSGGTQVSSSVSVPGEGSRNKRKFRADPPTAVDAEEITSSPQNGCPSYQFSAEKFEATEVHGLTTACDLCGVSQDSIDELKLNLGLSSPVSSCE VLPSQPSGELALEESHDPDWGHITESQLEELVLSNLNAIFKSAIEKIVACGFTEQVATKAILRSSVYDGSKDTVSNIVDNTLEFLRNGQDIDPSREHCFG DLQQFQKYILAELVCLVREARPVFSTGDAMWCLLISDMNVSHAFATDGDPMISGSADGASHEPSCSPQQTQIEPKSEGPESIDTTPLKQVPTVPCSRNLE TSTNIPKVVKVTKSKNSVALNGQVSDKEGSTSAFDPVDKFFNIAGPSQSHVMEEKFTVTRKAVSGSTMREFILRQRSSLHLEKGYRTYGSKGSLRSGKLS GLGNLVKLKCVSDSTSVNIKNSSIRLSMVVGAYTPQDGGNQSLPNNSRLSSPVSSSQEAPSAAPCPKSNIPRVLPPTNGLPAKPPVSAIPGLLTADTELS LALPAKNSSSLDSVGCHNIATLPIDIPWVPQDKKDEMIVKLLPRVRVLQNQLQEWTEWVNQKVMQAARRLSKDKAELKLLRQEKEEVERLKKEKQTLEEN TMKKLNEMENALRKASGQVERASSAVRRLEVENAELRQEMEAAKLRAAESAASCQDASKREKKTLIKLQSQEKQKGLLQEDLGTEKRKVSILLHDLEVAK RKQEQREGRWQQEEKANEELLRQAGETRKERDRIEASTKSEEDMMKLKAANSLQRYKDNIEKLEKEISKLRLKVHSSKIAALRKGINENQATKAADLKGN PTQKERWTNYVSELGTDLSDYSEKGGVERERECVMCLSEAMSVVFLPCAHQVVCTSCNELHEKKGMKDCPSCRSHSCRSHIQRRIRVCNGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	0	1
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10001284 [exp]	3.0	0.7461
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	5.5	0.7607
AT1G26580			unknown protein		Lus10036888 [exp]	6.0	0.7509
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	9.5	0.7326
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	12.8	0.7330
AT5G53440			unknown protein		Lus10019025 [exp]	13.6	0.7312
AT3G19780			unknown protein		Lus10013425 [exp]	15.3	0.7048
AT1G26580			unknown protein		Lus10037097 [exp]	17.7	0.6938
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	18.4	0.6994
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	20.0	0.7148

Compare expression of checked genes

Lus10021954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.