Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21550 229 / 3e-77 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT3G21520 168 / 6e-53 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT4G18425 146 / 3e-44 Protein of unknown function (DUF679) (.1) AT5G46090 145 / 6e-44 Protein of unknown function (DUF679) (.1) AT4G24310 130 / 5e-38 Protein of unknown function (DUF679) (.1) AT3G02430 129 / 3e-37 Protein of unknown function (DUF679) (.1) AT1G09157 106 / 2e-28 Protein of unknown function (DUF679) (.1) AT5G27370 102 / 2e-27 Protein of unknown function (DUF679) (.1) AT5G39650 103 / 5e-27 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT4G28485 0 / 1 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041247 [exp] 367 / 2e-131 AT3G21550 241 / 8e-82 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Lus10015396 [exp] 150 / 2e-45 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 149 / 5e-45 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 149 / 6e-45 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 149 / 6e-45 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 146 / 7e-44 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 144 / 5e-43 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10018635 [exp] 137 / 2e-40 AT5G46090 192 / 8e-62 Protein of unknown function (DUF679) (.1) Lus10036581 [exp] 132 / 1e-38 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027600 [exp] 241 / 5e-82 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G115100 [exp] 226 / 4e-76 AT3G21550 213 / 9e-71 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.017G016300 [exp] 150 / 9e-46 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 148 / 6e-45 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 145 / 1e-43 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.003G008600 [exp] 127 / 1e-36 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 127 / 1e-36 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 117 / 4e-33 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 115 / 5e-32 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 115 / 9e-32 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10021955 pacid=23157992 polypeptide=Lus10021955 locus=Lus10021955.g ID=Lus10021955.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAGGTCTAATTTCCTCTTCAGGATCGCCGCGGAAGCTCCGATCGATGCAGGAAATGACATTTTCAGGGATAGGGAACATGATAAAGATGC TCCCGACAGGAACGGTGTTCATGTTCCAGTTCCTGAACCCTGTCCTGACCAATAACGGGAAATGCCAGACGGTCAACAAGTACCTAAGCGGGGCCCTGTT GACCGTCTGCACTTTCAACTGCTGCTTCACATCCTTCACCGACAGCTACGTGGACCCCGAAGGTGGGGTCCACTACGGTATCGCGACTTTCAAAGGCTTC TGGCCGAAGCCTTCTTCTTCTTCTTTAGGATCTGACTGGTCGGGTTACCGGATCAGGGTGGGGGACTTCTTCCACGCGTTCCTTTCGCTGATCGTGTTTG CGGCTGTGTCGCTGTTGGATACCAATACGGTGTCGTGCTTCTTCCCGGGGTTCGAGTCCGGTGGGAAAGTGCTGCTCATGTCTCTGCCGCCGGTGATTGG ACTGGTTTCGAGTGTCGTGTTTGCGATTTTCCCTAACAATCGCCATGGAATCGGGTACCCGCCAGCGAGTGGTCAGGATGCGTCCAAGACTTCGTGA
AA sequence Show only first row Show all	>Lus10021955 pacid=23157992 polypeptide=Lus10021955 locus=Lus10021955.g ID=Lus10021955.BGIv1.0 annot-version=v1.0 MAETGLISSSGSPRKLRSMQEMTFSGIGNMIKMLPTGTVFMFQFLNPVLTNNGKCQTVNKYLSGALLTVCTFNCCFTSFTDSYVDPEGGVHYGIATFKGF WPKPSSSSLGSDWSGYRIRVGDFFHAFLSLIVFAAVSLLDTNTVSCFFPGFESGGKVLLMSLPPVIGLVSSVVFAIFPNNRHGIGYPPASGQDASKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	1.7	0.9854
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	2.8	0.9778
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	4.5	0.9721
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	4.9	0.9666
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	4.9	0.9775
AT5G57510			unknown protein		Lus10026228 [exp]	6.9	0.9460
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	7.1	0.9584
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	7.4	0.9631
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	7.5	0.9737
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	7.7	0.9695

Compare expression of checked genes

Lus10021955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.