Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39040 321 / 4e-107 Peroxidase superfamily protein (.1) AT1G05250 282 / 3e-92 Peroxidase superfamily protein (.1) AT1G05240 282 / 3e-92 Peroxidase superfamily protein (.1) AT1G05260 275 / 2e-89 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 274 / 3e-89 Peroxidase superfamily protein (.1) AT3G21770 271 / 4e-88 Peroxidase superfamily protein (.1) AT3G01190 269 / 3e-87 Peroxidase superfamily protein (.1) AT5G15180 265 / 2e-85 Peroxidase superfamily protein (.1) AT4G36430 248 / 7e-79 Peroxidase superfamily protein (.1) AT2G18150 247 / 2e-78 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041249 [exp] 504 / 1e-172 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041250 [exp] 384 / 7e-132 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1) Lus10027164 [exp] 283 / 1e-92 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 278 / 1e-90 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 271 / 8e-88 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10015127 [exp] 271 / 9e-88 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 268 / 7e-87 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10031548 [exp] 267 / 2e-86 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10012684 [exp] 255 / 1e-81 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042800 [exp] 332 / 4e-112 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 295 / 2e-97 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 291 / 5e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 291 / 5e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 291 / 5e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 291 / 5e-96 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 290 / 3e-95 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 277 / 3e-90 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 268 / 6e-87 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 265 / 1e-85 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10021956 pacid=23157995 polypeptide=Lus10021956 locus=Lus10021956.g ID=Lus10021956.BGIv1.0 annot-version=v1.0 ATGGTTTCCACTAAGACAGCCATCGCCTTCTTCTTCCTTTCTCTCTTGCTTTTCGTCCTACCTTATGCCTCTCATGCCAAAGGCCATAACGGCAACAATG GTCGGCGGGGTCGGAGAGACGACAACGGCCAAGGTAAGGGAAATGGACGGCCGGATCTGCCGCCATCTCCAATCCTGAAGGACTGCCCACAGTTTGAAAC GGTCGCTAGGGATATTACTTGGAGTAGGGTTGCTGCTGACCCTACCTTGGCTCCCAAGCTACTCAGGCTGCACTATCATGATTGCTTTGTCAGGGGTTGT GACGCGTCCATATTGCTGGATTCGACGGCTACGAATTCAGCAGAGAAAGATGCAATTCCAAATAGATCGTTAGCAGGGTACGAGGTTATCGACGAGATTA AAGCTCGATTAGAAGCGGTTTGCCCCGCAACTGTCTCGTGTGCTGATATCCTTACATTGGCTGCGAGAGATGCTGTTTCTTTTCAGTTCAAAAGGGCAAT GTGGCCGGTTTTCGCCGGGAGGAAGGATGGTCGAGTTTCTATGGCATCTGAAGTGCCAACGAACTTACCATCTCCATCCGGAAATATTACTACGCTCATC CGACAATTCCGAAACAAAGGACTCGATCTTCAAGATCTCGTCGCGTTGTCAGGCGCCCACACAATCGGGGTGAGTCGGTGCAGGGTGATATCGAGGAGGC TGTTCAACTTCACCGGAAGAGGGGACACCGACCCGTCGATTGCGCCAGGACTCGCTAGTACCCTTAAGGCACAATGTTCCAACCCAGGTGGTGGTGCTGG AGTAACCTTGGAGATGGATCCTGGAAGCTCAACTTCCTTTGACGCTCACTACTACCAGGCCTTGGACCAGAACCAGGGACTCTTTCAAAGCGATGCTGCA CTGATGACGGACCAGCGGTCGGCTCTACTCAGCCGGATTTTGGCAAGTAATGATGATCAGCTTTTCTTCGCCACGTTTGCTCGGTCGATGGTGAAGATGG GCGCCATTGTCGACGGTGATGGCACCGAAGGAGAGATTAGGAGGAACTGTCGCTTTGCAAAACCATTCCTGATGCAGAACAAGATCGGGGACCTTGTCGA TCCGGTTCTTGGGGAATCTTACGATTCGGAGGAAATGGGACGAGCCGTCTTTTTAGCTGCTATGTGCGTGGAACAGGCCTCGGTACAGCGGCCACAAATG AAGCAGGCAGTGGAGATTCTGATGGGTGATGAGAGCACCTTGGAAGAATGTAAACATATGCACAAGCCTAAGCTGCAAAGGACATACTCCGAGGAGCTTT TGGATGCGGACGAGTACAACTCAACAACATAG
AA sequence Show only first row Show all	>Lus10021956 pacid=23157995 polypeptide=Lus10021956 locus=Lus10021956.g ID=Lus10021956.BGIv1.0 annot-version=v1.0 MVSTKTAIAFFFLSLLLFVLPYASHAKGHNGNNGRRGRRDDNGQGKGNGRPDLPPSPILKDCPQFETVARDITWSRVAADPTLAPKLLRLHYHDCFVRGC DASILLDSTATNSAEKDAIPNRSLAGYEVIDEIKARLEAVCPATVSCADILTLAARDAVSFQFKRAMWPVFAGRKDGRVSMASEVPTNLPSPSGNITTLI RQFRNKGLDLQDLVALSGAHTIGVSRCRVISRRLFNFTGRGDTDPSIAPGLASTLKAQCSNPGGGAGVTLEMDPGSSTSFDAHYYQALDQNQGLFQSDAA LMTDQRSALLSRILASNDDQLFFATFARSMVKMGAIVDGDGTEGEIRRNCRFAKPFLMQNKIGDLVDPVLGESYDSEEMGRAVFLAAMCVEQASVQRPQM KQAVEILMGDESTLEECKHMHKPKLQRTYSEELLDADEYNSTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10036793 [exp]	4.2	0.8524
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	5.5	0.8538
AT4G05030			Copper transport protein famil...		Lus10016059 [exp]	11.4	0.8212
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	12.6	0.7681
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	13.7	0.8554
					Lus10004308 [exp]	16.0	0.8142
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	17.3	0.8106
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	22.6	0.8396
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	23.1	0.8458
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	24.8	0.6988

Compare expression of checked genes

Lus10021956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.