Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39040 108 / 2e-27 Peroxidase superfamily protein (.1) AT1G05250 98 / 1e-23 Peroxidase superfamily protein (.1) AT1G05240 98 / 1e-23 Peroxidase superfamily protein (.1) AT3G01190 93 / 5e-22 Peroxidase superfamily protein (.1) AT4G11290 91 / 6e-21 Peroxidase superfamily protein (.1) AT2G18150 89 / 2e-20 Peroxidase superfamily protein (.1) AT2G18140 89 / 2e-20 Peroxidase superfamily protein (.1) AT5G15180 88 / 4e-20 Peroxidase superfamily protein (.1) AT1G05260 86 / 3e-19 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G66390 85 / 8e-19 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041250 [exp] 224 / 1e-71 AT2G39040 310 / 3e-104 Peroxidase superfamily protein (.1) Lus10041251 [exp] 140 / 9e-42 ND / Lus10041249 [exp] 144 / 1e-38 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10021956 [exp] 130 / 5e-35 AT2G39040 323 / 6e-108 Peroxidase superfamily protein (.1) Lus10007638 [exp] 99 / 8e-24 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10018374 [exp] 98 / 2e-23 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10039681 [exp] 97 / 2e-23 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 96 / 5e-23 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10009901 [exp] 94 / 2e-22 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122200 [exp] 98 / 1e-23 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 97 / 3e-23 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 97 / 3e-23 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 97 / 3e-23 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 97 / 3e-23 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 97 / 3e-23 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 94 / 5e-22 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 90 / 9e-21 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 87 / 8e-20 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 86 / 3e-19 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10021957 pacid=23157986 polypeptide=Lus10021957 locus=Lus10021957.g ID=Lus10021957.BGIv1.0 annot-version=v1.0 ATGGACGTCTCTTGCTTTCTTCTTGTGGAGGGAAGTGCAGATTCTGAGGAGGATCATGATCAGTACCACCATCATCATGGATTCATCAAGAAGTCATCAT ATGATTACAATGAAGATCAGAAACAAGATCAGCTGGAGGAAGCAAATAATGATGATGTTGTGATTGATGATGCAGAGTCTTGTAGCTGCGACGAGCCAGA GCTCGACCACTTTCTCTTCCTTCTCAGCCATCCACATCAAGCTGCTGCTTCTTGCCATGATGATGAAGATGATGATGGTGCTATTGATGAAGAGGAACCA CCGAGTAGCGTCAACAATATTAATGGAGAAGAGAATTATGACAGTAATAAGTTGATTATGAGCAGAGAGATTATGGATAGAATGGAGGATAGCGTGTTCT GGGAAACTTGGGTGCACACAATCGGGGTGAGCCGGTGCGGGGCGGTAATAAAGAGGCTATACAACTTCTCGGGAGCCGGAGACACCGATCCAGCCATGGC ACCAAACTACGCAAAAACGCTCAAGTCAAAATGCTCGAATTTTAACCCCAATGTCCAAGTTGAGCTCGACAGTGGAAGCTCGAACACTTTCGATACTCAT TCCTACAAGGCCTTGATCGAAAAGCAAGGACTTTTACCATCAGACGTTACGTTGCTGTCGGACAAGCGATCGGCCGAAATGAGCCGGAACTTTGTAGGCA ACGAACAGCTTTTCCTTGATAAATTTGGTAAGTCTATGGTGAAGTTGGGCGGCATTGGCATGGGAGTTGGTCACGGAGAGATCAGGAAAAATTGTCGCCG TGTTAATTGA
AA sequence Show only first row Show all	>Lus10021957 pacid=23157986 polypeptide=Lus10021957 locus=Lus10021957.g ID=Lus10021957.BGIv1.0 annot-version=v1.0 MDVSCFLLVEGSADSEEDHDQYHHHHGFIKKSSYDYNEDQKQDQLEEANNDDVVIDDAESCSCDEPELDHFLFLLSHPHQAAASCHDDEDDDGAIDEEEP PSSVNNINGEENYDSNKLIMSREIMDRMEDSVFWETWVHTIGVSRCGAVIKRLYNFSGAGDTDPAMAPNYAKTLKSKCSNFNPNVQVELDSGSSNTFDTH SYKALIEKQGLLPSDVTLLSDKRSAEMSRNFVGNEQLFLDKFGKSMVKLGGIGMGVGHGEIRKNCRRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	0	1
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	1.4	0.7879
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	7.5	0.7622
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	8.5	0.7469
AT2G23755			unknown protein		Lus10000575 [exp]	9.5	0.7179
					Lus10021979 [exp]	10.7	0.7141
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	11.3	0.7404
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	12.6	0.7404
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	13.9	0.7404
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	15.0	0.7404
					Lus10032733 [exp]	15.0	0.6350

Compare expression of checked genes

Lus10021957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.