Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32620 816 / 0 Enhancer of polycomb-like transcription factor protein (.1.2) AT5G04670 149 / 3e-36 Enhancer of polycomb-like transcription factor protein (.1) AT4G31880 62 / 3e-09 unknown protein AT1G15940 60 / 2e-08 Tudor/PWWP/MBT superfamily protein (.1) AT5G10950 57 / 9e-08 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 56 / 2e-07 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G80810 56 / 3e-07 Tudor/PWWP/MBT superfamily protein (.1.2) AT1G05830 52 / 3e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G47690 50 / 1e-05 binding (.1.2.3) AT2G31650 47 / 0.0001 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041252 [exp] 2892 / 0 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10008985 [exp] 129 / 4e-30 AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) Lus10028841 [exp] 127 / 6e-29 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10018332 [exp] 62 / 5e-09 AT4G31880 464 / 2e-149 unknown protein Lus10010010 [exp] 61 / 1e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017121 [exp] 61 / 1e-08 AT4G31880 473 / 2e-152 unknown protein Lus10030133 [exp] 54 / 3e-07 AT1G15940 63 / 4e-11 Tudor/PWWP/MBT superfamily protein (.1) Lus10009948 [exp] 52 / 4e-07 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1) Lus10039082 [exp] 54 / 2e-06 AT5G47690 1661 / 0.0 binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246200 [exp] 1358 / 0 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.018G034900 [exp] 728 / 0 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.008G024300 [exp] 163 / 9e-41 AT5G04670 488 / 3e-162 Enhancer of polycomb-like transcription factor protein (.1) Potri.010G235900 [exp] 151 / 5e-37 AT5G04670 518 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) Potri.014G121701 [exp] 69 / 4e-11 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.003G181300 [exp] 60 / 2e-08 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G046500 [exp] 59 / 4e-08 AT4G31880 267 / 1e-76 unknown protein Potri.016G005400 [exp] 57 / 9e-08 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 54 / 1e-06 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.018G020400 [exp] 53 / 2e-06 AT4G31880 389 / 3e-120 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [flax] [poplar] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Lus10021959 pacid=23157984 polypeptide=Lus10021959 locus=Lus10021959.g ID=Lus10021959.BGIv1.0 annot-version=v1.0 ATGGATCGGGAATTTCCCAAAAGGTCAAGATCTCTGGATCTTAAGAGTCTTTATGAATCAAAGAGTACAGAAGAGGTCCTAGGGACTAACTCGAAACGGA AAGGTCGTTTGAATGATGATGGTGATGGTAGTAGAAGTAATAAGAGGAAGAAGAGTGGGAAGGCAGTGTCTGTAAATAGATTGAAGACTGTTACTGGCAA TGGAAGCAGGAGTTTGGAAGAAGTTTACAATGGCAGCTTGACTTCTGTTGCACATGGCTCAAACGATTCACACTTGTGTTTGAGTCAGAAGTCGAATGAT AATGGTGGGTTCAATAGCATTGCACTAACTCTGGAAGATGAGGTTATTAAAATCCCTAGGCGAAAGCGAGGTATTGTCAGGCGACGGAAACTTGAGAATG GCGATAAAGTGTTAAAGCTGGAAGCGAAGAATGGTCATGTGGGCGATGTTGTTGACGATGGGAAGAGTACAAGTGATAAGGTTCATGCTATTCCTATATC TAATGGAGAACATTTTGAATCATCTAAGCTTAAAAGGAAGAAAATTGTCGATAATTTCAAGGAAAACAAAAATGGTGAATCAAATTCAGGTAGTGATCTG AAAGAGGTAAATGCTGAAGATGATCCTTTATTCCTGAAAAATGGAGAGTCTTCCCCTAAGAAATCTCTGACTCATCATTCAGCTGTAAATGCTCAAGGTA AGCCTTCAAATGGGTCTCTTAGGAAGCGGAGTAGAAAAAGAAAGAACAAGGCATTAGATGTCAGAAGTCCACCAACAGAGGTTGAGCCATCAGGGAAGAG ATCTGACAAGATTGTTGATAAAGTTGGTCGGGAGGATGAAGAGAATCTCGAAGAGAATGCTGCGAGAATGCTATCATCACGGTTTGATCCCAGCTGTACT GGATTCTTGTTGAAGAAAAAGGTGTCATCTTTACCACTTAGAAATGGATTGCCCCATACCCCATCTTCTGGTAAAGACATTTTTGTACAGGGTGCTGAAT GTGCCTCTGGTTCGGACTCTGCTTCTGATGATAATGCTCTTAGAGTATTGCGACCAAGAAAGCAGTTCAAGGAGAAGGGTAGCACTAGGAAGAGAAGACA CTTTTATGAAATGTTGTCCAGTGAACTGGATGCATACTGGGTTTTAAATAGGAGAATTAAAGTATTTTGGCCTTTGGATGAAAGTTGGTATTACGGCCTT GTTAATGATTATGATAAAGAGAAAAAGCTTCATCATGTGAAGTATGATGACCGTGATGAAGAGTGGATTGACCTTCAGAATGAGAGGTTTAAACTCTTGC TGTTTCCTAGTGAAGCACCAGGTAGAAACCACAAAAAAAGAACAGCGTCACGGAGGAAACACTCCATTGTAGGCGAGGGTAAATTACCCAGCAGAAAAGA TGACAAGAAAGAAATGTTAGCAGAAGAGGATAGCCCAGTAGCTAAGCATATGGATTCAGAACCCATCATCTCATGGCTGGCTAGATCTTCTCGGAGAGTG AAATCTCCTCCATTTTCTGCTCCAAAGAAGCAGAACAAGCCTTTTGGATCCCCAAGTTCTGGGCGACCTCTGACAAAGGATCCGATGGATGGCTCTGAGT GTAGAGATAGAAGGTCGTTGAATGTGCAAGCAGCCACTTCCCGAAGGAGTGAGTTCTGCCACACAGCAAGTCCTTTGGGTACAAATGATGGCAAGCTTAC AATTGTCTATTACAGGAGGCGGTTCCGTAAGAAAAACATTCAATCATGTCATGATTCTAAAGCCAATCATGTATCTAGCAGTGTTCCTGATCTGGATGCT TGTACCCCATTATATTCTGAAGTGGATTTCAGCAAGTTGGTGCCTATAGATTCACTGTGGTCAATTGACAGTGCTGGAAACTTGGAATTGAATATTGCAA TGATACTATTAAGAAAGTTCACATTTAAGTTGAGTTGCCATGTGCCCTCTGTCCGGAATTGCACTTTCAGTAAGCTGAACATTTATTTGTGTCATGCTGT ATTAGTACTTCACTTCGGGAAGATGATGGCTATGTTGCCAAGGGTTCAGTTGGAGATGCTTATAGTTGACAATGTAGTGGGTTTGAGGCTTCTTTTGTTC GAAGGATCCTTGAAACAAGCTGTCGCATTTGTCTTTGTGGTCCTTGAGATATTTGGTCAACCTGATGAGCCTGGAAAATCTATTCATCTAGAGTTGCCAG TGACTTCAATCAAATTCAGATTTTCTTGCTCTGTTTATGGGGGTAAGCAGCTTGTGTTTCTGTTTTACAAATTATCTGAAGTTGAAAATTCATGTTGGAT TCATCTGGAACATAAAATAAACAAGCACTGTGTACTTACTCGGCAATTACCTATATCTGAATGCACCTACGACAACATTAAGGGTCTAGAAAATGGAAGT AACGGGCTGCTCACTTCTGCTTTGAGGGGCACGACAAGAGACAAGCGATCCAGCAGGAGGTCTCGGAAGCATATCAACCTCATGAGTGTGCCTAGAAAAC CAAGATACGCAACAAGAAGTCACTCATTCAACCCTGAGGTGGATCACAGATATTTCCCTCCAATTTCTATCTCCTTCACTGCCGCACCTTCATTTTTTAT AGGTCTTCATCGTAGGCTGCTTGTGGAGCATACTCTTACTCGTATCAGTTTTCAAGATCATGGCTCGCCAGTAGATCCTGAAACTAGTGACAGTATGCTG TTGGATGACCAGTTTTGTAGAATCCCTGATAGCAATTATCCTCATGAACCCCATTTGGAGCCTAAAAGGAGTACGGCAATTTCTTCGTCTGTTGTCGAGG AGCCTGTGAATATGGAAAATGATACTAGTTATGAGTTGCAGCTTGAACCTTCAGATTCTATCCAACAAAAACTTTTGCCTAGGTCATCTGCAGCAGATGG AGTTGAGTTTCGTATTATCCCCAGCCCAAATCCTACTGCCCGCAGAAGTACATGGCACCGAAATAGAAGTAGTTCTGCTTCTTTCGGAGGCTCCATACAT GGATGGTCAGAAGGAAGGGCGGAATTACTTCAGAGCAACTTCAGCAATGGACCCAAGAAACCACGCACACAGGTGAATTATGCTTTGCCTTTTGGAGGAT TTGATCTTGGCTCCAGAGGTAAAGGTCATCAGCACAAAATGCCCCCTCATAAACGGATTAGGACTTCAAATGAGAAGAGGTCCTCTGATACTTTGAAGGC CTCTGAAAGGAATCTGGAATTGTTGTCTTGCGACGTAAACCTGTTACTGACTGTTGGTGATAAAGGGTGGAGACAACACGGGGTACAGGTTGTTTTGGAA CATTTTGATCACAGTGAGTGGAGGCTTGCTGTGAAAGTATCTGGCAGCACAAAGTATTCATACAAGGCGCCCCAATTCCTGCAGCTTGGCTCGACAAACC GGTTTACACATGCCATGATGTGGAAAGGAGGAAAGGACTGGACTTTGGAGTTTCCTGACAGGAGCCAGTGGACTCTTTTCAAAGAGATGCATGAAGAGTG TTACGATCGTAATATGCGAGCTGCATTGGTTAAAAATATTCCAATACCTGGTGTTCGGTTGATAGAGGAAAATGAGGATCAAGGAACTAATGCACCATTT TTTCGATCGCCCAAGTACTTCTGTCAGGTAGAGACAGATGTTGAGATGGCTTTGAACCCCTCTAGAGTGCTGTATGACATTGATAGTGATGATGAGGGTT GGTTGTCAGAGAAGCATAAAACTTTGGAAGTTCAAAATGGAAGTTCTACTGAGATTTCTGAAGAACTCTTTCAGAACATCATGGACATGTTTGAGAAAAC AGCATACTCTCGACAATGTGACCATTTTACTGCAGAGGAAGTGGAAGAACTCATGGCTGGTGCAGGGTCCGTGGAAGTAATCAAGCCGCCACGTTGGCAA AGATACCAACAAGAAGTGAGGGAGTGGGAGCAAGCAAAGGCCAAGAGTCTCCATTCAAATGGCGGCTCTAAGAAAGTTGCAGATAGTGAGAAGCCGGCAC TGTTTGCCTTCTGTCTGAAACCACGAGGTCTAGACCTGCCTAACCGAGGGTCGAAGCATAGGTCACATAAGAAACTCTCAGTTTCTGGACAAAGCAATAC CTTCTCTGCATATCATGATGGTTTCCATGCTTACGCAGGCAGACGATTGAATGGCTTTGCATATGGGGATGAAAGGGTCCCCTGGGTACAGAATTACGAG TCTATGGATTATGATTCTCCGTTGCCTCAGAGATCACCTAGGTTCTTCTCACTGAGGGATGCAGATGGAAGCAGCCCGGGTTACATTTACCCGCATGCTA GTAGATTCCACATGCAGAGACTTCAACGAAGCAAGTCTAAGAAAGCAGGGAAGTCTCAATCTCGTACGGGATCGCAGAGAGAACCTTCCTACAATGAACG AATGTTAGTGGAAAGGATTGGTGGTGAGGGGTGGACTACAGAGTGGCCAAACCAGCGCCCATATAATTTAGACTGGTCTTTCCAGCATCATGGTTGTGAG CAGTTGGATGGTCCGGATTTGGACGAGTTTAGGATGCGGGACCCATCAGGTGCGGCTCAGCACGCTTTAAACGTGGCTAAATTCAAGAGAGAAAAAGCTC AGAGATTGTTGTGCAGGGCGGATTTAGCCATCCACAAGGCTGTTGTTGCCCTTATGACTGCCGAAGCTATCAAGGCTGCAGCCTCCTCCTCTGACGAGGA AGAGGAGGAGGAGGAGGAGGATCTAAACAGTTGA
AA sequence Show only first row Show all	>Lus10021959 pacid=23157984 polypeptide=Lus10021959 locus=Lus10021959.g ID=Lus10021959.BGIv1.0 annot-version=v1.0 MDREFPKRSRSLDLKSLYESKSTEEVLGTNSKRKGRLNDDGDGSRSNKRKKSGKAVSVNRLKTVTGNGSRSLEEVYNGSLTSVAHGSNDSHLCLSQKSND NGGFNSIALTLEDEVIKIPRRKRGIVRRRKLENGDKVLKLEAKNGHVGDVVDDGKSTSDKVHAIPISNGEHFESSKLKRKKIVDNFKENKNGESNSGSDL KEVNAEDDPLFLKNGESSPKKSLTHHSAVNAQGKPSNGSLRKRSRKRKNKALDVRSPPTEVEPSGKRSDKIVDKVGREDEENLEENAARMLSSRFDPSCT GFLLKKKVSSLPLRNGLPHTPSSGKDIFVQGAECASGSDSASDDNALRVLRPRKQFKEKGSTRKRRHFYEMLSSELDAYWVLNRRIKVFWPLDESWYYGL VNDYDKEKKLHHVKYDDRDEEWIDLQNERFKLLLFPSEAPGRNHKKRTASRRKHSIVGEGKLPSRKDDKKEMLAEEDSPVAKHMDSEPIISWLARSSRRV KSPPFSAPKKQNKPFGSPSSGRPLTKDPMDGSECRDRRSLNVQAATSRRSEFCHTASPLGTNDGKLTIVYYRRRFRKKNIQSCHDSKANHVSSSVPDLDA CTPLYSEVDFSKLVPIDSLWSIDSAGNLELNIAMILLRKFTFKLSCHVPSVRNCTFSKLNIYLCHAVLVLHFGKMMAMLPRVQLEMLIVDNVVGLRLLLF EGSLKQAVAFVFVVLEIFGQPDEPGKSIHLELPVTSIKFRFSCSVYGGKQLVFLFYKLSEVENSCWIHLEHKINKHCVLTRQLPISECTYDNIKGLENGS NGLLTSALRGTTRDKRSSRRSRKHINLMSVPRKPRYATRSHSFNPEVDHRYFPPISISFTAAPSFFIGLHRRLLVEHTLTRISFQDHGSPVDPETSDSML LDDQFCRIPDSNYPHEPHLEPKRSTAISSSVVEEPVNMENDTSYELQLEPSDSIQQKLLPRSSAADGVEFRIIPSPNPTARRSTWHRNRSSSASFGGSIH GWSEGRAELLQSNFSNGPKKPRTQVNYALPFGGFDLGSRGKGHQHKMPPHKRIRTSNEKRSSDTLKASERNLELLSCDVNLLLTVGDKGWRQHGVQVVLE HFDHSEWRLAVKVSGSTKYSYKAPQFLQLGSTNRFTHAMMWKGGKDWTLEFPDRSQWTLFKEMHEECYDRNMRAALVKNIPIPGVRLIEENEDQGTNAPF FRSPKYFCQVETDVEMALNPSRVLYDIDSDDEGWLSEKHKTLEVQNGSSTEISEELFQNIMDMFEKTAYSRQCDHFTAEEVEELMAGAGSVEVIKPPRWQ RYQQEVREWEQAKAKSLHSNGGSKKVADSEKPALFAFCLKPRGLDLPNRGSKHRSHKKLSVSGQSNTFSAYHDGFHAYAGRRLNGFAYGDERVPWVQNYE SMDYDSPLPQRSPRFFSLRDADGSSPGYIYPHASRFHMQRLQRSKSKKAGKSQSRTGSQREPSYNERMLVERIGGEGWTTEWPNQRPYNLDWSFQHHGCE QLDGPDLDEFRMRDPSGAAQHALNVAKFKREKAQRLLCRADLAIHKAVVALMTAEAIKAAASSSDEEEEEEEEDLNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	1.0	0.9816
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	1.4	0.9607
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	2.4	0.9478
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	3.2	0.9498
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	4.2	0.9512
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	4.5	0.9502
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006377 [exp]	5.7	0.9368
AT1G27850			unknown protein		Lus10006433 [exp]	6.7	0.9367
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	10.2	0.9224
AT1G79090			unknown protein		Lus10031210 [exp]	10.2	0.9131

Compare expression of checked genes

Lus10021959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.