Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25540 92 / 8e-24 CID6 CTC-interacting domain 6 (.1) AT5G11440 83 / 1e-20 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1) AT2G26280 45 / 1e-05 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041253 [exp] 277 / 2e-96 AT5G25540 95 / 6e-25 CTC-interacting domain 6 (.1) Lus10009796 [exp] 47 / 2e-06 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10038081 [exp] 47 / 3e-06 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G246600 [exp] 100 / 8e-27 AT5G11440 103 / 2e-28 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1) Potri.018G047700 [exp] 44 / 3e-05 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1) Potri.006G218900 [exp] 39 / 0.001 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10021960 pacid=23158036 polypeptide=Lus10021960 locus=Lus10021960.g ID=Lus10021960.BGIv1.0 annot-version=v1.0 ATGAAGTCTGGAACTTCTAGTTTAAACCCATATGCAACCTCATATGTACCTATTTCTAAGAGGAAGGTAGGTGAGCATACTCAAGCTCGTGGGGCACCAG TTTCCAAAGCTTGGCAGAGTTACAATCACTATGGACCTGAGCATGCTGCTGAGAGCAGGCAACACAACGACCAGGGGTTTTATGGTTCATCTTTGCGAAG TCCTGATGACAAGATAGATAAGCAAATGACAGAGGAAGGATTTGACATGGATTTGGAATTCCTTCGGATGTCATTCCCTGATGTATCTTCTGAATCACTT GTGGATGTCTATGCTGCAAATAATGGAGACCTGGAAAATACTTTCGACATGCTTAACCAACTCGAGTTTGACAATCCCACAAGTCTTCCAGACACGTTGG AAATCGGGGATGTTCCCGAGTCAGAGTCCGAGTCATCTCTAAAACTGAAGAATGTGGTTGGTGAAGGCAGCAGTGGCACTTCATCAAGTTCCTCAGCCTC TGCAACAGTTGCTAGCTAA
AA sequence Show only first row Show all	>Lus10021960 pacid=23158036 polypeptide=Lus10021960 locus=Lus10021960.g ID=Lus10021960.BGIv1.0 annot-version=v1.0 MKSGTSSLNPYATSYVPISKRKVGEHTQARGAPVSKAWQSYNHYGPEHAAESRQHNDQGFYGSSLRSPDDKIDKQMTEEGFDMDLEFLRMSFPDVSSESL VDVYAANNGDLENTFDMLNQLEFDNPTSLPDTLEIGDVPESESESSLKLKNVVGEGSSGTSSSSSASATVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10021960 [exp]	0	1
AT5G40670			PQ-loop repeat family protein ...		Lus10014572 [exp]	4.2	0.8717
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	7.7	0.8731
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	18.2	0.8555
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10008447 [exp]	22.8	0.8205
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	23.0	0.8340
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	28.7	0.8617
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	45.7	0.8382
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	51.4	0.8100
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	59.0	0.8016
AT5G35690			unknown protein		Lus10000922 [exp]	60.9	0.8241

Compare expression of checked genes

Lus10021960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.