Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25530 390 / 3e-136 DNAJ heat shock family protein (.1) AT2G20560 337 / 1e-115 DNAJ heat shock family protein (.1) AT3G08910 330 / 4e-113 DNAJ heat shock family protein (.1) AT4G28480 330 / 2e-112 DNAJ heat shock family protein (.1.2) AT1G59725 320 / 1e-108 DNAJ heat shock family protein (.1) AT5G01390 315 / 1e-106 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 309 / 2e-104 DNAJ heat shock family protein (.1) AT3G47940 304 / 2e-102 DNAJ heat shock family protein (.1) AT2G20550 219 / 5e-70 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 172 / 4e-51 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041254 [exp] 535 / 0 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10008109 [exp] 375 / 2e-123 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10027803 [exp] 340 / 2e-116 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 339 / 3e-116 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 330 / 9e-113 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 325 / 1e-110 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 322 / 1e-109 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 319 / 8e-108 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10015402 [exp] 310 / 8e-105 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034600 [exp] 431 / 2e-152 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 389 / 9e-136 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 330 / 6e-113 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 328 / 7e-112 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 325 / 1e-110 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 325 / 1e-110 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 324 / 5e-110 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 321 / 2e-109 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 321 / 5e-109 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 308 / 4e-104 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021961 pacid=23158064 polypeptide=Lus10021961 locus=Lus10021961.g ID=Lus10021961.BGIv1.0 annot-version=v1.0 ATGGGTTTGGATTACTACAATATCCTGAAGGTGGACAGGAGTGCATCAGAAGACGATCTGAAGAAATCATACAGAAAGTTGGCAATGAAATGGCATCCTG ACAAGAACCCCAACAACAAGAAAGAAGCTGAAGCCAAATTCAAACAGATCTCTGAAGCTTACGATGTGCTGAGCAACCCACAAAAGAGGGCAATCTACGA TCAGCGTGGAGAAGAAGGGCTGAACGAGATTCCACCGTCTGGATTTGGGAATGGGAGTAATCATGGACCAAACGATTTCAATTCAAGAAATGCAGAAGAC ATTTTTGCCGAGTTTTTCGGGAGCAGCCCATTTGGGTTTGGCGGAGCTGGAAGATCATCCACCAGGTTCCAGTCGGAAGGTGGAGCAGCAGCTGAAACCG CCGCCCCCGCCGCCGCCGCGCCTCTTAAGAAGCCGCCTCCGGTAGAGAGCAAATTGCCTTGCAGACTTGAAGAACTTTATTCCGGCTCCACCAGGAAAAT GAAGATCTCCAGAACAGTCGTTGACGCCCATGGGAGGCAGACGCAAGAAACAGACATAGTGACAATAGACGTGAAGCCAGGGTGGAAGAAGGGAACAAAG ATAACATTCCCAGACAAAGGCAACGAGCAACACAACCAGCTACCAGCAGACCTGGTGTTCGTCATCGACGAGAAGCCTCACGACGTGTACAAAAGGGACG GGAACGATTTAATGATCGACCGGCAGGTCACTCTTGCGGAAGCATTGGGAGGAACAACCCTCAACATCAACACCCTTGACGGCCGGACCGTTTCGATCCC GGTGACCCACATTGTGAGCCCTGGCTATGAGATGCTCGTCTCCGGGGAAGGTATGCCGATTGCTAAAGAGCCAGGGAACAGGGGAGACTTGAGGATCAAG TTTGAGGTTAAGTTTCCTACCAGGTTGACTATGGAGCAGAGAGCTGGGCTCAAGCGTGCCTTAGGAGATTGA
AA sequence Show only first row Show all	>Lus10021961 pacid=23158064 polypeptide=Lus10021961 locus=Lus10021961.g ID=Lus10021961.BGIv1.0 annot-version=v1.0 MGLDYYNILKVDRSASEDDLKKSYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSNPQKRAIYDQRGEEGLNEIPPSGFGNGSNHGPNDFNSRNAED IFAEFFGSSPFGFGGAGRSSTRFQSEGGAAAETAAPAAAAPLKKPPPVESKLPCRLEELYSGSTRKMKISRTVVDAHGRQTQETDIVTIDVKPGWKKGTK ITFPDKGNEQHNQLPADLVFVIDEKPHDVYKRDGNDLMIDRQVTLAEALGGTTLNINTLDGRTVSIPVTHIVSPGYEMLVSGEGMPIAKEPGNRGDLRIK FEVKFPTRLTMEQRAGLKRALGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	3.9	0.8489
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10011041 [exp]	7.7	0.7368
AT3G26830		CYP71B15, PAD3	PHYTOALEXIN DEFICIENT 3, Cytoc...		Lus10011384 [exp]	8.1	0.7650
					Lus10014682 [exp]	9.5	0.7996
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	27.6	0.7410
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	29.1	0.7268
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	33.5	0.7571
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	36.7	0.6973
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	40.0	0.7080
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	72.4	0.7055

Compare expression of checked genes

Lus10021961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.