Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14200 66 / 1e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041255 [exp] 273 / 4e-83 AT4G14200 76 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146200 [exp] 164 / 4e-41 AT4G14200 96 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G235900 [exp] 159 / 8e-40 AT4G14200 97 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021962 pacid=23157970 polypeptide=Lus10021962 locus=Lus10021962.g ID=Lus10021962.BGIv1.0 annot-version=v1.0 ATGGATACTGATCATGGCAGCAACAATGTCACTCCTCCTCCCACACCACCACCTGGAGCTGATGAGAGCCATGGAGGAGGAGGAGGAGGAGGAGGAGGAG TGCTCGTTTGCAATAAATGTGGGTGGCATTACCCTAACCAAAACCCCAGCTCAAGACACAGGCGTGCTCATCGCAAGATCTGTGGAACCCTTCCAGGCTA CAGTAGCGCTGTCGCCGCCGTTCCAGCGTCTCCGCCGCAGCTTCAGACTTTCTATTCCTTTGCTTCCGCCGATGACCATCCCTCCGACGACGATGGCGAA TTCAAGATCCCTAGTCCTAATGTATTGGAGAGGAGTCAAATGGAGATGGGCAGCAGTGGTGGAACGGGTGGGAAATCTAGTAGATCAGAAGATGAGGTAT TCTCGGATGCTGTTACTGACTTTGTGGATGCTGCTGCTGCATCATCTTCTTTGAGACTTCAACAGCACAAGGATATCGAGGGTCCAGTTAATGGTCCTTC AGATGAGACAACGCAGATGCAAATCTCAGAAGTTGAAGTTCATCCAGATAGAGCTGCACCAGCTTCTGAAGAATACAACCCAATTGCTGCAACTGAGTTG ACAGGAAGGTCAAATCCGGATGTTGTAACCAAAGAACCTGGTGATGTATCTGGTGATACTGGACTAGTGCCGATGAGTGACTTGAATCCAATGATACCCA GAAATCAAATTAATGATCCTGGAGAGGTGACACTGAACTGTATTGATGATCTGTCCGACACTTATCAAGAGAATGGGGAAACTACTCCAGAAGTTCATGT AGCTAGTGGTCTGGATTTGTCAGGTGATAATGATGTCAAATTATCTGAAGGAATGCCTAGGATAGAGCAGACTGTGGTTGTGAATTCGAATACCGGAGGC ATCTCTAAATTGGACGATGAGAACACTGCAAAACCCACGATTGGCTGTGGTAATGAAACGATAGAAACTAATAGTTCCGCTGATGATATGCAATCTACTG ATAACATCAATACATCTTATGATGAGGTCGACAAGGAAGATACTCCTGTAGTAGCTGCCTTTGCAACTTCGAATGAGTCTGAGGGTTCGAAATGTACGGA CGATGGGAATGCACATGTTCTTTCAGTCAATCATGAGATAACATATGTTGACAATGCCGAGGCAGTGATTAAAGGATTTAAAGGTGAAGGGATCAAAGTT CTTACATCTGTCAAATCAGGCTCTGAAACTATTGATGTGAAAGCTTCTGAACCTGCTATGGAGGATTTTAAATCCAGCAATTTATCATCTTCATCTTCAC CGGATGTCCAGGTTGTAGGAGACAGCCTTGAAGTCAAAGGTGAAAGCAGCCAGCTTGTTGCTGAAGTGTTGGATGTAACTGAAGGTGAGGGAACTCTTTT GTCTTCACCGGAAGTTCCGGTTTTGGGAGACAACCTTGAATTCAAAGGGGAAAGCAACAAGTTTGTTACAAACAAGCTGGTGGATGGAACTGAAATTGAT ATCTCATGCATCGCAAATGAAAGCTTAGGAGAAATGGAATTCTCCGTTGACGCGGGGGCACTTCCTGTACAATCTTCTGAAGAACAAATTGGTGGTGCTA TATTGATTGGAAGCAATCTGGATTCAACCACAGAGGTTTCATCTGACACAAGTCAGCAAATTTCATCTGCAGATAGACAAGGCGATCAACTTAATAGGCC TGATGATACTGTTCCTGATAGTTACAAAATTCCAAATAATGAAGTGACTAATGTAGATGACGATAGTAATATCATTATTGAGAATGAGAGGCCCAACTTA CTTGGCGGTCAGCATGAGACCAATGTTACTGGAACTGAAAAGTCAGATCCCTCGAGCTTTGTCGACCAGAATGTTTCAGAAAAACTGGTGCAAACTCTTG AACCTGATACAGAACATCGGAGGTCAAATATTGATGTTTCTAGGCATAGGTCGCAAGAAGCACAGGACATTGAGAGTAACTTTCTTGGAGGTGTGAGTAC TACTGATAGTGAAGGGAACAAAATTGATAGAAATGTTGAACCTGCAGCCGAACTTGGGGCAAGTGCTTCAGATGCTGAGGTGTCGCAGAAGTCTCCACAA GACCTTGTAGCAAATGATCTGTTGATTTCACCTCCAGATACTGATTCAAATAAAGATGCTGGAGTAGTTAACGATGAATGCACCAGAGATGTGGTCGGAG ATGTATCTGATGATAAACCTGAGCTCGTTTCTAAAGAAGGTCAGTTCTCTGGAAAACATGTTGATACATCTGCAGCAGATATTTCAGTTGATTCAAATAG CCAAACTGATAGTCTGGAAGGCCAGTGGGGTTCTGTTTCAGGTAAAGCAGTGGTATCGACACAATCGGATATGCCAGTAAGTGTGGATGCTGAAGGAGGA TCAAGTAAAAGCAGCAGGAAGATAGCAAATGCTCCACGTGAGAGACAAGAAACAGATATGTTTGAGGCTCCATCTTTCATGACACTTGTTGAGCCAATAA AAGGCAGTGCTTCAGATATCCAGAATCCTCAGCAGTCAAAAGCTGGTGCTAGTCCTGCTCAAGCTGGGTGGTTCCCTTCAATTACGAATGTGGTAAACGA GTCTGAAGGGAGGAAGAAGAACGAAGAAATAATAGCAAAGGTGACAACTCATCGCAGTGGTGGAGGGATACAGTTGAAAAGCCTATTGGGGGAGGCAAAT GAGGAAATGAAATCGAGATCGCCGAAGAAGGAAAACACAGGTGTCGTCGAAACCACAGCAGCAAGAGAAGTGAGAAGAATGAAGGAGGAAGGTGTTGTTG GGGGGGGAAGAATGGAGTTCACCTGA
AA sequence Show only first row Show all	>Lus10021962 pacid=23157970 polypeptide=Lus10021962 locus=Lus10021962.g ID=Lus10021962.BGIv1.0 annot-version=v1.0 MDTDHGSNNVTPPPTPPPGADESHGGGGGGGGGVLVCNKCGWHYPNQNPSSRHRRAHRKICGTLPGYSSAVAAVPASPPQLQTFYSFASADDHPSDDDGE FKIPSPNVLERSQMEMGSSGGTGGKSSRSEDEVFSDAVTDFVDAAAASSSLRLQQHKDIEGPVNGPSDETTQMQISEVEVHPDRAAPASEEYNPIAATEL TGRSNPDVVTKEPGDVSGDTGLVPMSDLNPMIPRNQINDPGEVTLNCIDDLSDTYQENGETTPEVHVASGLDLSGDNDVKLSEGMPRIEQTVVVNSNTGG ISKLDDENTAKPTIGCGNETIETNSSADDMQSTDNINTSYDEVDKEDTPVVAAFATSNESEGSKCTDDGNAHVLSVNHEITYVDNAEAVIKGFKGEGIKV LTSVKSGSETIDVKASEPAMEDFKSSNLSSSSSPDVQVVGDSLEVKGESSQLVAEVLDVTEGEGTLLSSPEVPVLGDNLEFKGESNKFVTNKLVDGTEID ISCIANESLGEMEFSVDAGALPVQSSEEQIGGAILIGSNLDSTTEVSSDTSQQISSADRQGDQLNRPDDTVPDSYKIPNNEVTNVDDDSNIIIENERPNL LGGQHETNVTGTEKSDPSSFVDQNVSEKLVQTLEPDTEHRRSNIDVSRHRSQEAQDIESNFLGGVSTTDSEGNKIDRNVEPAAELGASASDAEVSQKSPQ DLVANDLLISPPDTDSNKDAGVVNDECTRDVVGDVSDDKPELVSKEGQFSGKHVDTSAADISVDSNSQTDSLEGQWGSVSGKAVVSTQSDMPVSVDAEGG SSKSSRKIANAPRERQETDMFEAPSFMTLVEPIKGSASDIQNPQQSKAGASPAQAGWFPSITNVVNESEGRKKNEEIIAKVTTHRSGGGIQLKSLLGEAN EEMKSRSPKKENTGVVETTAAREVRRMKEEGVVGGGRMEFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	0	1
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	7.7	0.8821
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	8.7	0.9140
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10042893 [exp]	9.8	0.8448
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	10.5	0.9086
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	13.6	0.8914
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031241 [exp]	14.1	0.8890
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	16.3	0.8997
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10042602 [exp]	17.1	0.8930
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	17.3	0.8629
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	19.8	0.8751

Compare expression of checked genes

Lus10021962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.