Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05520 1317 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 1297 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT4G14160 1262 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT2G21630 857 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 674 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 125 / 3e-29 Sec23/Sec24 protein transport family protein (.1) AT2G27460 53 / 8e-07 sec23/sec24 transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041256 [exp] 1575 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 1009 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 999 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 667 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 624 / 0 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 547 / 0 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 496 / 5e-166 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 145 / 1e-35 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 143 / 5e-35 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307400 [exp] 1342 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 1335 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 1023 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 707 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 682 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 661 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 137 / 4e-33 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 135 / 2e-32 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.009G163300 [exp] 55 / 2e-07 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.004G201800 [exp] 52 / 1e-06 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10021963 pacid=23157980 polypeptide=Lus10021963 locus=Lus10021963.g ID=Lus10021963.BGIv1.0 annot-version=v1.0 ATGTCGGAAATGGCGAACACAGATCCCGAAGGACTTGACGGGGTTCGGATGACGTGGAACGTGTGGCCTCGTACAAAGGTGGAAGCTAGCAAATGCGTAA TCCCTCTGGCAGCCTGCATCTCTCCGATCCGCCATCACTCGGATATTCCGACCCTACCTTACGCGCCTCTCCGATGCAAGACCTGCGCTTCCCCTCTCAA CTGCTTTGCCCGCGTCGACTTCAACGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGGAACCATTTCCCTTCCCATTATGGCATGATCTCCGACACC AATCTCCCCGCCGAGCTCTACCCTCAATACACCACCGTCCAGTACACTTTACCTAACCCTAGCGTTAATCCACAGATGTCTGCCTTCGATCCATCGGCTG CTCCTTATCCTCCGACTCCGTCCCCGGTTTTCCTCTTCGTCCTCGACACTTGTATGATCGAGGAGGAATTTGGCTTCGTCAGATCCGCATTGAAGCGCGC CATCGGTTTGTTGCCTGATAATGCTCTTGTTGGATTGGTGACGTTCGGCACCCAAGCTCATGTCCATGAGCTAGGATTCTCCGATTTGTCCAAGGTATAT GTTTTCAGGGGGACCAAGGAGATCACTAAAGATCACGTTATGGAGCAATTGGGTCTGACATTTCCCGGCCGTAGATCTCCTGCTACTGCTACTTCTGCAG CTGCTGCTTACCAAAACAAAGGAGCGATGCCCAATGGCTTCCCCGGTTCTGGAGTCACCAGGTTCTTGTTACCTGCATCTGAGTGCGAATTTCCCCTCAA TTCGCTCCTGGATGAGCTGCAAACCGACCAATGGCCTGTCTCACCAGGGACCCGGGCCTCAAGGTGCACTGGCGTTGCTTTGAGTGTTGCAGTTGGACTG CTTGGAGCTTGTGTCCCCGGCACTGGTGCAAGAATTATCGCTTTGGTTGGAGGTCCATGCACTGAAGGCCCTGGCACGATTGTATCGAAGGATTTGTCTG AGCCTGTACGTTCACATAAGGACCTTGACAAGGATGCAGCTCCATACTTCAAGAAAGCAGTCAAGTTCTATGACGGCCTGGCAAAACAGCTTGTCAGCCA GGGCCATGTGTTGGATGTTTTTGCATCGGCGCTTGATCAGGTTGGAGTTGCTGAAATGAAAGTTGCAGTTGAGAGAACTGGTGGCCTTGCTGTCCTATCA GAGAGCTTTGGGCACTCTGTATTTAAGGACTCTTTCAAGCGTGTATTTGCAGACGGGGAACATTCTCTTGGCCTCTGTTTCAATGGAACACTTGAGGTTA ACTGTTCGAAGGATATCAAAATTCAGGGCATAATTGGTTCCTGCACATCAATGGACAAGAAAGGGCCTAATGTTGCTGATACCGTAATTGGGGAAGGCAA TACTACAGCTTGGAAGATGTGTGGGCTTGATAAGAGTACTTGCTTGACGGTGTTTTTTGATCTTTCATCAAGTGATAGATCAAATGCCCCTGGCACTGTA AATCCACAACTATATCTACAGTTCCTTACTAGCTATCAAAATCCTGAAGGTCAAACACTGCTTCGGGTGACAACTGTAACTAGGAGCTGGATAGATAGTG CTGTTAGCTCTGAGGAATTAGTACAAGGTTTTGATCAAGAGACGGCGGCTGTAGTTATGGCAAGACTGGCGTCCTTAAAAATGGAGATAGAGGAAGGATT TGATGCAACTCGTTGGTTGGACCGGAACCTGATTCGTTTGTGTTCCAAATTTGGGGACTATCGGAAAGATGATCCATCATCCTTCACATTGAACCCTTGC TTTTCATTGTTCCCCCAGTTCATGTTTAATCTGAGACGATCACAGTTCGTACAGGTTTTCAACAACAGCCCAGATGAAACGGCTTATTTCCGGATATTAT TAAACAAAGAAAACATTACAAACGCCGCTGTCATGATCCAACCGTCATTGATATCTTATTCCTTCAACTCATTACCTCAACCCGCACTTCTAGACGTTGC TTCTATTGCAGCTGACCGGATCCTTTTGTTAGATTCTTACTTCAGTGTTGTCATTTTCCATGGTATGACAATAGCACAGTGGCGTAACATGGGTTACCAG AATCAGGCAGAGCACCAGGCATTTGCGCAGCTTTTACAAGCACCTCAAGATGACGGTCAGATGATCATCCAGGAGCGATTCCCAGTTCCTAGGCTAGTGG TGTGTGATCAGCATGGATCCCAGGCAAGGTTCTTGTTAGCGAAATTGAACCCGTCAGCAACATACAACAATGCTCACGAGATGGCGGCTGGGTCGGATGT GATATTCACGGATGATGTTAGCCTTCAAGTATTCTTCGAGCATTTACAGAGGCTAGCGGTGCAGTCCTGA
AA sequence Show only first row Show all	>Lus10021963 pacid=23157980 polypeptide=Lus10021963 locus=Lus10021963.g ID=Lus10021963.BGIv1.0 annot-version=v1.0 MSEMANTDPEGLDGVRMTWNVWPRTKVEASKCVIPLAACISPIRHHSDIPTLPYAPLRCKTCASPLNCFARVDFNAKIWICPFCFQRNHFPSHYGMISDT NLPAELYPQYTTVQYTLPNPSVNPQMSAFDPSAAPYPPTPSPVFLFVLDTCMIEEEFGFVRSALKRAIGLLPDNALVGLVTFGTQAHVHELGFSDLSKVY VFRGTKEITKDHVMEQLGLTFPGRRSPATATSAAAAYQNKGAMPNGFPGSGVTRFLLPASECEFPLNSLLDELQTDQWPVSPGTRASRCTGVALSVAVGL LGACVPGTGARIIALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPYFKKAVKFYDGLAKQLVSQGHVLDVFASALDQVGVAEMKVAVERTGGLAVLS ESFGHSVFKDSFKRVFADGEHSLGLCFNGTLEVNCSKDIKIQGIIGSCTSMDKKGPNVADTVIGEGNTTAWKMCGLDKSTCLTVFFDLSSSDRSNAPGTV NPQLYLQFLTSYQNPEGQTLLRVTTVTRSWIDSAVSSEELVQGFDQETAAVVMARLASLKMEIEEGFDATRWLDRNLIRLCSKFGDYRKDDPSSFTLNPC FSLFPQFMFNLRRSQFVQVFNNSPDETAYFRILLNKENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQ NQAEHQAFAQLLQAPQDDGQMIIQERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021963 [exp]	0	1
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	1.0	0.9579
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	1.4	0.9302
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	7.1	0.9244
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	8.1	0.8702
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	8.1	0.8992
AT2G15240			UNC-50 family protein (.1)		Lus10027865 [exp]	9.0	0.8660
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	10.2	0.9116
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	11.5	0.8838
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	12.6	0.8846
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	12.6	0.9029

Compare expression of checked genes

Lus10021963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.