Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05520 478 / 1e-164 Sec23/Sec24 protein transport family protein (.1) AT3G23660 461 / 5e-158 Sec23/Sec24 protein transport family protein (.1.2) AT4G14160 432 / 9e-149 Sec23/Sec24 protein transport family protein (.1.2.3) AT2G21630 262 / 3e-81 Sec23/Sec24 protein transport family protein (.1) AT5G43670 226 / 2e-67 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021963 [exp] 617 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 612 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 329 / 1e-106 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 329 / 1e-106 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 231 / 2e-69 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 119 / 2e-29 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 67 / 7e-12 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 62 / 3e-10 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 61 / 5e-10 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003100 [exp] 480 / 2e-165 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 479 / 5e-165 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 351 / 3e-115 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 232 / 7e-70 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 223 / 2e-66 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 191 / 7e-56 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 55 / 5e-08 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 52 / 5e-07 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain
Representative CDS sequence Show only first row Show all	>Lus10021964 pacid=23157993 polypeptide=Lus10021964 locus=Lus10021964.g ID=Lus10021964.BGIv1.0 annot-version=v1.0 ATGTCGGAAATGGCGAACACAGATCCCGAAGGACTTGACGGGGTTCGGATGACGTGGAACGTGTGGCCTCGTACAAAGGTGGAAGCTAGCAAATGCGTAA TCCCTCTGGCAGCCTGCATCTCTCCGATCCGCCATCACTCGGATATTCCGACCCTACCTTACGCGCCTCTCCGATGCAAGACCTGCGCTTCCCCTCTCAA CTGCTTTGCCCGCGTCGACTTCAACGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGGAACCATTTCCCTTCCCATTATGGCATGATCTCCGACACC AATCTCCCCGCCGAGCTCTACCCTCAATACACCACCGTCCAGTACACTTTACCTAACCCTAGCGTTAATCCACAGATGTCTGCCTTCGATCCATCGGCTG CTCCTTATCCTCCGACTCCGTCCCCGGTTTTCCTCTTCGTCCTCGACACTTGTATGATCGAGGAGGAATTTGGCTTCGTCAGATCCGCATTGAAGCGCGC CATCGGTTTGTTGCCTGATAATGCTCTTGTTGGATTGGTGACGTTCGGCACCCAAGCTCATGTCCATGAGCTAGGATTCTCCGATTTGTCCAAGGTATAT GTTTTCAGGGGGACCAAGGAGATCACTAAAGATCACGTTATGGAGCAATTGGGTCTGACATTTCCCGGCCGTAGATCTCCTGCTACTGCTACTTCTGCAG CAGCAGCTTTACCACACCACGAGGGGATGCCCAATGGCTTCCCCGGTTCTGGAGTCACCAGGTTCTTGTTACCTGCATCTGAGTGCGAATTTCCCCTCAA TTCGCTCCTGGATGAGCTGCAAACCGACCAATGGCCTGTCTCACCAGGGACCCGGGCCTCAAGGTGCACTGGCGTTGCTTTGAGTGTTGCAGTTGGACTG CTTGGAGCTTGTGTCCCCGGCACTGGTGCAAGAATTATCGCTTTGGTTGGAGGTCCATGCACTGAAGGCCCTGGCACGTCGATCTATACTTCTATGTTAC TATACTCGCTATCTGTCGATGTCTAA
AA sequence Show only first row Show all	>Lus10021964 pacid=23157993 polypeptide=Lus10021964 locus=Lus10021964.g ID=Lus10021964.BGIv1.0 annot-version=v1.0 MSEMANTDPEGLDGVRMTWNVWPRTKVEASKCVIPLAACISPIRHHSDIPTLPYAPLRCKTCASPLNCFARVDFNAKIWICPFCFQRNHFPSHYGMISDT NLPAELYPQYTTVQYTLPNPSVNPQMSAFDPSAAPYPPTPSPVFLFVLDTCMIEEEFGFVRSALKRAIGLLPDNALVGLVTFGTQAHVHELGFSDLSKVY VFRGTKEITKDHVMEQLGLTFPGRRSPATATSAAAALPHHEGMPNGFPGSGVTRFLLPASECEFPLNSLLDELQTDQWPVSPGTRASRCTGVALSVAVGL LGACVPGTGARIIALVGGPCTEGPGTSIYTSMLLYSLSVDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	0	1
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021963 [exp]	1.4	0.9302
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	3.0	0.9179
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	5.5	0.9153
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	5.7	0.8992
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	6.5	0.9113
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	6.6	0.8964
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	6.6	0.9195
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	8.7	0.9172
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	9.8	0.8920
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	10.2	0.8906

Compare expression of checked genes

Lus10021964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.