Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10830 440 / 1e-154 Z-ISO1.2, Z-ISO1.1, Z-ISO 15-cis-zeta-carotene isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041258 [exp] 541 / 0 AT1G10830 488 / 1e-173 15-cis-zeta-carotene isomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146900 [exp] 459 / 3e-162 AT1G10830 512 / 0.0 15-cis-zeta-carotene isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF07298 [flax] [poplar] NnrU NnrU protein
Representative CDS sequence Show only first row Show all	>Lus10021965 pacid=23157968 polypeptide=Lus10021965 locus=Lus10021965.g ID=Lus10021965.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTCAAACGCTCCTCATCTCTAATCCCCTCTCCGCCCTCCGCCGCCGCCCAACAACCACCACCCCCGTCGCCGCCGTCCCATCCTCCACTT ACTTTCCCTCTGCAACTCTATTTCCATCCTCAGCCTTCCACCACTGTCATCGTCCTCTTCTTCTTCTTCTCCGTCCCCCTTCCAGTTCCATCCTCCGCAG TCGCCTTCTACCTCCTCCTTGCAGTTCCGTTCGGGATGTCGACTCCTCCGTCGACGACCCACCGCCAATCCCGGAAGACGCAGCTCTTTTCCGATTGGAC AATCAAAAGTTCTCCTCCTGGCTCTACTTCTCCGTCATCTTGGGAGTCGTCCTTTTCCTCCTCAACCTCCTCTGGATAGACAACTCCACTGGCTACGGCA AGGCCTTCGTCGACGCTGTTTCCTCTGTCTCCGACAGCCCCGAGGTCGTAATGCTGATTCTCATCCTGGCATTCGCACTTGCCCATAGTGGATTGGCCAG CCTCAGAGATGCCGGAGAGAAGCTCATCGGAGAACGAGCATTTCGTGTTCTGTTTGCTTCCACGTCTCTTCCTTTGGCCGTTACCACTGTTGTGTACTTC ATCAATCACAGGTATGACGGGACACAATTATGGCAGCTTCAAACTGTCCCTGGGATGCATGAATTCGTCTGGCTCTCCAACTTCATCTCCTTCTTCTTCC TCTACCCTTCAACCTTCAATCTATTGGAGGTTGCAGCCGTTGACAAGCCAAAGATGCACCTTTGGGAAAATGGAATCATCAGAATCACAAGGCACCCCCA GATGGTTGGCCAAGTGATGTGGTGTGTGGCACATACACTGTGGATGGGGAACTCGGTGGCCGTGGCTGCCTCGGTTGGTCTGATCGCACACCATCTTTTC GGAGTGTGGAACGGAGATAGGAGGCTAGCAGCAAGGTACGGAGAAGCATTTGAAACGGTGAAGGAGAGGACGAGTGTAGTTCCATTTGCAGCCATTCTGG ATGGTCGACAAAAGCTCCCTAAAGATTACTACAAGGAGTTCTTGAGGCTGCCTTATCTCACCATCACCGCGATAACTTTAGGCGCTTATTTTGCACACCC GCTGATGCAGGCTTCTAGCTATGGCCTCCATTGGTAA
AA sequence Show only first row Show all	>Lus10021965 pacid=23157968 polypeptide=Lus10021965 locus=Lus10021965.g ID=Lus10021965.BGIv1.0 annot-version=v1.0 MASSQTLLISNPLSALRRRPTTTTPVAAVPSSTYFPSATLFPSSAFHHCHRPLLLLLRPPSSSILRSRLLPPPCSSVRDVDSSVDDPPPIPEDAALFRLD NQKFSSWLYFSVILGVVLFLLNLLWIDNSTGYGKAFVDAVSSVSDSPEVVMLILILAFALAHSGLASLRDAGEKLIGERAFRVLFASTSLPLAVTTVVYF INHRYDGTQLWQLQTVPGMHEFVWLSNFISFFFLYPSTFNLLEVAAVDKPKMHLWENGIIRITRHPQMVGQVMWCVAHTLWMGNSVAVAASVGLIAHHLF GVWNGDRRLAARYGEAFETVKERTSVVPFAAILDGRQKLPKDYYKEFLRLPYLTITAITLGAYFAHPLMQASSYGLHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	0	1
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	4.0	0.7993
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	5.3	0.7960
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	6.3	0.7915
AT5G13030			unknown protein		Lus10031224 [exp]	6.3	0.7864
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	8.8	0.7717
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10041258 [exp]	8.8	0.7925
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	8.9	0.7605
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	9.5	0.7611
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	13.7	0.7660
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	15.9	0.7265

Compare expression of checked genes

Lus10021965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.