Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14210 894 / 0 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) AT3G04870 212 / 3e-61 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT1G65840 50 / 4e-06 ATPAO4 polyamine oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041260 [exp] 1103 / 0 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10015935 [exp] 232 / 2e-68 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10009190 [exp] 204 / 2e-58 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10024003 [exp] 47 / 4e-05 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10008379 [exp] 42 / 0.0009 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148700 [exp] 925 / 0 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.002G235200 [exp] 877 / 0 AT4G14210 899 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.005G050700 [exp] 233 / 5e-69 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.013G037700 [exp] 231 / 4e-68 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.004G177400 [exp] 55 / 1e-07 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10021967 pacid=23158000 polypeptide=Lus10021967 locus=Lus10021967.g ID=Lus10021967.BGIv1.0 annot-version=v1.0 ATGTACGGGAGCGCCACCGTCTCGGCCCTCAACTTCAGTTGTCTGGATAAAGTCAGGTGGAAGAATTCACACTCACCTTCAATTGATCAATCACTTGCCT TCAGGGGAAGTGACTCTCTCAAATTCCATTCCTTTAGTCAATTGTCTAACAGGAGACTAAGACATAATCCCACTCCTTTGAAGGTGTTGTGCGTTGACTA CCCTAGACCTGACCTTGACAACACTGTCAATTTCTTGGAAGCTGCTTCTTTCTCTTCCTCCTTCCGTTCTTCCCCACGCCCTTCTAAACCCCTGAAGGTT GTTATTGCTGGTGCAGGTTTGGCTGGTTTAGCAACAGCAAAGTATTTGGCGGATGCAGGCCATAAGCCTATAGTTCTGGAGTCCAGAGATGTTCTGGGAG GAAAGTTGGCTGCCTGGAAGGATGAGGATGGAGACTGGTACGAGACTGGCTTGCATATTTTCTTTGGGGCATACCCAAATGTGCAGAACCTATTTGGGGA ACTCGGCATCGATGATAGATTGCAATGGAAGGAGCACTCTATGATATTTGCTATGCCGGACAAGCCAGGAGAGTTTAGCAGATTTGACTTTCCTGAAGTC CTCCCTGCTCCATTAAACGGGATATTAGCCATTCTAAGGAATAATGAAATGCTCACCTGGCCAGAGAAAGTGAAGTTTGCAATTGGGCTCCTACCTGCAA TGCTTGGTGGGCAGGCTTACGTTGAGGCTCAAGATGGTCTTACCGTTCAGGATTGGATGAGGAAGCAGGGAGTACCCGATCGAGTGACTACTGAGGTGTT CATTGCCATGTCTAAAGCACTAAACTTCATTAATCCGGAAGAACTATCAATGCAGTGTATACTGATAGCCTTGAACAGATTTCTTCAGGAGAAGCATGGT TCTAAGATGGCATTTTTAGACGGTAACCCCCCAGAAAGACTATGCAAGCCTATGGCTGATCATATTGAGTCATTGAGTGGTGAAGTCCGTCTTAATTCAC GAATAAAGAAAATTGATCTCAACAATGATGGAACAGTAAAGAGCTTTTCACTTACCAATGGAAATGTTATTGAAGCAGATGCGTATGTGTTTGCCACTCC AGTTGATATCCTGAAGCTTCTTATGCCTGAAAACTGGAAGGAGATTCCATACTTCAAGAAACTGGAGAAATTAGTTGGTGTTCCTGTCATTAACGTTCAC ATATGGTTTGACCGGAAACTAAAGAACACATATGATCACCTCCTTTTCAGCAGGAGTCAGCTTCTGAGTGTATATGCTGACATGTCTGTGACATGTAAGG AATATTACGACCCAAACAAATCGATGCTAGAGTTGGTGTTTGCACCTGCAGAGGAATGGATATCACGCAGTGACTCAGAAATTATCGAAGCTACAATGAA GGAACTTGCAACTCTGTTCCCGGATGAAATATCTGCAGATCAGAGCAAGGCGAAAATTGTGAAGTATCATGTTGTAAAAACTCCAAGGTCTGTGTACAAG ACAGTTCCAGACTGTGAACCTTGCCGGCCATTGCAAAGATCTCCAGTGGAGGGGTTCTACTTGGCAGGTGACTACACAAAGCAGAAATATTTGGCACCCA TGGAAGGTGCTGTTCTGTCAGGGAAGCTTTGCGCCCAAGCAATCGTTCAGGATTATGAGTTGCTGGAAGCTCGGGGACAGAGAACACGACTGACTGAGGC TACAGTGAGTTGA
AA sequence Show only first row Show all	>Lus10021967 pacid=23158000 polypeptide=Lus10021967 locus=Lus10021967.g ID=Lus10021967.BGIv1.0 annot-version=v1.0 MYGSATVSALNFSCLDKVRWKNSHSPSIDQSLAFRGSDSLKFHSFSQLSNRRLRHNPTPLKVLCVDYPRPDLDNTVNFLEAASFSSSFRSSPRPSKPLKV VIAGAGLAGLATAKYLADAGHKPIVLESRDVLGGKLAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIDDRLQWKEHSMIFAMPDKPGEFSRFDFPEV LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAMLGGQAYVEAQDGLTVQDWMRKQGVPDRVTTEVFIAMSKALNFINPEELSMQCILIALNRFLQEKHG SKMAFLDGNPPERLCKPMADHIESLSGEVRLNSRIKKIDLNNDGTVKSFSLTNGNVIEADAYVFATPVDILKLLMPENWKEIPYFKKLEKLVGVPVINVH IWFDRKLKNTYDHLLFSRSQLLSVYADMSVTCKEYYDPNKSMLELVFAPAEEWISRSDSEIIEATMKELATLFPDEISADQSKAKIVKYHVVKTPRSVYK TVPDCEPCRPLQRSPVEGFYLAGDYTKQKYLAPMEGAVLSGKLCAQAIVQDYELLEARGQRTRLTEATVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	0	1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	1.0	0.9471
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	1.4	0.8725
AT2G41150			unknown protein		Lus10023250 [exp]	4.2	0.8607
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10029052 [exp]	4.9	0.8340
AT5G48220			Aldolase-type TIM barrel famil...		Lus10001179 [exp]	7.1	0.8314
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	12.1	0.8214
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	14.3	0.8100
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	19.0	0.8055
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	20.1	0.8171
AT3G19900			unknown protein		Lus10034203 [exp]	23.6	0.8307

Compare expression of checked genes

Lus10021967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.