Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23690 159 / 2e-46 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 157 / 2e-44 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G48560 155 / 5e-44 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 151 / 1e-43 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G07340 153 / 2e-43 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G26260 145 / 3e-41 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G59640 143 / 3e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT1G10120 144 / 1e-40 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 141 / 3e-40 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G18300 141 / 6e-40 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041261 [exp] 417 / 1e-148 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 160 / 3e-47 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013052 [exp] 160 / 1e-45 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 160 / 1e-45 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002337 [exp] 158 / 2e-45 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030581 [exp] 160 / 2e-44 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 160 / 2e-44 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023562 [exp] 150 / 1e-43 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 149 / 7e-43 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235400 [exp] 171 / 2e-49 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 169 / 1e-48 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 158 / 1e-44 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 152 / 4e-43 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.008G113200 [exp] 154 / 6e-43 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 153 / 1e-42 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 150 / 2e-42 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G156000 [exp] 149 / 3e-42 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G040000 [exp] 141 / 7e-41 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.002G114700 [exp] 145 / 9e-41 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021968 pacid=23158076 polypeptide=Lus10021968 locus=Lus10021968.g ID=Lus10021968.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGTTCTTGTGGTCCAATGAGGAATGGAGGGATCCCTGCAGCTCCCTTCTTCAGCAACTCCTTCTTCCCGATCCCACCAATGGCGGCCTCT TCTTCGTCAACAACAACACGAATCAAGGCGATCCCTTTGTCGAATCCGGATTCCCCCCTTACAAACCCAATTCCCCAATTCTTCCTCATGATCACACCAT GAACCCCAATCCAAATGTAAACATCACTAAGTTGCAGGGCAAAACCAGGGCAGCAGCAGCAGATGCAGGGGAGGGGTCTTCATTGTCTGAGCAGATGATC ATCGGAAAAAAGAGGAAGAAGGAAACAGAGGAGGAGGAATCAAAGGACTACATACACGTGAGGGCGAGGAGGGGTCAAGCTACTGACAGTCACAGTCTGG CAGAGAGAGTGAGGAGGGAGAAGATTGGGGAGAGGATGAAGTTCCTTCAGGATCTTGTTCCTGGTTGTAATAAGGTGACTGGTAAAGCTGTCAGGCTTGA TGAGATCATTAACTATGTCCAGTCTCTCCAGCGCCAGGTTGAGTTTCTGTCGATGAAAATGGCGACGGTCAACCCCAGATCAATGGAGTTCAACAACATC AAGTCTCTCCTTCTCTGCAAGGATAATGTAAGTGAGGGATCAACAGCTGGAGGACAACAAGAACATCAAGGGTTCCCTAATTACAATCAGACTGATCAGC ATCATCACTTTGGTGCCTCAAACCTCATTATAAGACATAATCAAGATGTCCAAATGGAACTGTGGAACGATGATCTGCAGAGTGTTGTACAGATGGGAAC ACTAGGGCTGACTCAGCAGCCACGTCATTAA
AA sequence Show only first row Show all	>Lus10021968 pacid=23158076 polypeptide=Lus10021968 locus=Lus10021968.g ID=Lus10021968.BGIv1.0 annot-version=v1.0 MEKQFLWSNEEWRDPCSSLLQQLLLPDPTNGGLFFVNNNTNQGDPFVESGFPPYKPNSPILPHDHTMNPNPNVNITKLQGKTRAAAADAGEGSSLSEQMI IGKKRKKETEEEESKDYIHVRARRGQATDSHSLAERVRREKIGERMKFLQDLVPGCNKVTGKAVRLDEIINYVQSLQRQVEFLSMKMATVNPRSMEFNNI KSLLLCKDNVSEGSTAGGQQEHQGFPNYNQTDQHHHFGASNLIIRHNQDVQMELWNDDLQSVVQMGTLGLTQQPRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	0	1
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	1.7	0.9412
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	2.8	0.9178
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	3.5	0.9207
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	4.5	0.9255
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	5.7	0.9135
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	5.9	0.9195
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	6.0	0.9303
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	6.9	0.8797
AT5G50090			unknown protein		Lus10043461 [exp]	6.9	0.9125
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	7.3	0.9159

Compare expression of checked genes

Lus10021968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.