Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14150 637 / 0 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G23670 637 / 0 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT3G19050 361 / 2e-103 POK2 phragmoplast orienting kinesin 2 (.1) AT3G44050 353 / 1e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 355 / 1e-101 POK1 phragmoplast orienting kinesin 1 (.1) AT3G20150 331 / 7e-96 Kinesin motor family protein (.1) AT3G45850 236 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 236 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 233 / 5e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 233 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041262 [exp] 1643 / 0 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 385 / 7e-115 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10027934 [exp] 360 / 7e-104 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 360 / 3e-103 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10008438 [exp] 355 / 4e-103 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018341 [exp] 359 / 7e-103 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 359 / 7e-103 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10013377 [exp] 350 / 3e-100 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 245 / 2e-66 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149000 [exp] 744 / 0 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 739 / 0 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 389 / 4e-116 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.004G193700 [exp] 366 / 2e-107 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G156000 [exp] 360 / 5e-105 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 363 / 4e-104 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.005G038900 [exp] 232 / 4e-66 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G150800 [exp] 241 / 4e-65 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G026000 [exp] 240 / 4e-65 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 239 / 1e-64 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10021969 pacid=23157977 polypeptide=Lus10021969 locus=Lus10021969.g ID=Lus10021969.BGIv1.0 annot-version=v1.0 ATGAAGCACTTCATGCTTCCCAGGAATCCCGTCTTGCGGGAACCTAACAGCGATTCACCTACTCCTCCACCCCCTTACTCTCTCAAATCCAAGCCCAATT TGTCTCCGTCCCCCTCCATTCCTTCCCGACGGCACAAATTCTCCAACGAGAATGCTCCTCCGCCGTCAGATCTCCACTCCTCACCCTCCCCCGCTCCTAA GATCAGGACTAATCTCCCTCCCAAGCCTCCTACCTCTAATCCTCTTAAGCGCAAGCTTGCCATGGACGCTGCTCAAGATTCATCGCCTCACGATTCTGGT GTCCAGGTGATTGTCAGAATGCGACCGTTAGGTAAGGATGATGAAGGAGACCTGACAGTTCAGAAATTATCTAACGATTCACTCTGTATTAATGGACACA ACTTCAGATTTGATTCTGTTGCTGATATAGAAGCAACACAGCAAGAAATTTTCCAGCTAATAGGAGCCCCTCTCGTTGAGAATTGTCTAGCTGGATTTAA CAGTTCAGTATTTGCTTATGGACAGACAGGGAGTGGAAAGACATACACTATCTGGGGTCCTTCTAATGTCATGTCGGAAATAGGGTCCTCAAGTGATCAA CAAGGATTAACTCCTCGTGAGCAAGTCAAGCATGCTGATAGACAACTGAAGTATCAGTGCCGATGCTCTTTCTTAGAGATATATAATGAACAGATTGCTG ATTTGTTGGACCCAAGCCAAGGAAACCTCCAGATAAGAGAAGATGTGAAGTCTGGTGTATATGTAGAAAATCTTACCGAGGAGTATGTGTTCACATTAAA AGATGTAAATCGACTCTTGATCAAGGGATTGTCCAATAGGAGGACCGGTGCAACAAGTGTAAATGCAGAAAGTTCTCGTTCACATAGTGTCTTCACCTGC ATTGTTGAATCCCGGTGCAAGAGCATGTCAGATGGCATAAGCAGCTTAAAGACGAGTAGAATAAATCTTGTTGATCTTGCTGGGTCAGAGCGACAGAAAC TGACCGGCGCTGCAGGCGAAAGATTAAAAGAAGCTGGGAACATCAATCGGTCTCTCTCGCAGCTTGGAAACTTGATAAATATACTAGCTGAAGTTTCACA GACAGGAAAACAGAGGCATATCCCTTATAGAGACTCCAAGTTGACATTTCTGTTGCAGGAGTCACTTGGAGGTAATGCAAAGCTAGCAATGGTCTGTGCC ATCTCACCTGCACAAAGCTGTAAGAGTGAGACTTTCAGTACTTTACGATTTGCACAGCGTGCCAAGGCAATAAAAAATAAAGCAGTTGTTAATGAAGAGA TGGAGGATGATGTGAATCATCTGCGAGGAGTCATACAGCAGCTAAGGGATGAGCTCCAACGAGTGAAGGCAAATAAGACCAACCCAACAGGCTGGGATCC GCACAAAAGTCTGAATATATTAAAAAGTCTAATGCATCCACATTCACTGCTAACCAAGTTGGATGAAGATGGTGATGAGGAAATGGAAATCGATGAGGAA GCTGTTGAAAAGTTCTGTGCAGCATCTGAAGATCAGGCTCTGAAGAACAGCAGAAGAGTTATGGAACAAGGTGCCGAGGACACTGATGTGGACATGGAGG AAGGCACACCAGAAAAGGTTGAGGACATGGATATTATTATTGGAGGTAACACAACGAAAAGAGTTCGTGCATCAACTGATCAGTTAGCAGCAAGCATCCA CCGGGGCCTTGAAATTTTGGATAGCCACCCAAGAAGTTCAGCATTCAGGCGTTCAGCATTTAGATTTTCTTATGTGCCTGCCGAAAATAAGCCAAGCCCC ATCATTGAAAAACTTGATGTTGGAGTCCAGACAATCTCTAAAGAGGATGATCTGCTGGATTTTATATGCAAGATATGCAAAGGAAAAGCAGAACTAGAAC AGTTCGATGGCATTGATGAGAGCTCAAACCTTCCGTTGGTACCTGTTGAAGACTCGGGATCTGAAGAAAAGTCCACAATGCAAGTCCCCAAAACTGTGGA GAACGTTTTAGAGTTAAATGGCACTGATGACAACTCAAACCTTCAGTTGGTACCTGTGGATGGCTCAGGATCAGCAGAAAAGTCCAAAATGCAAGTCCCT AAAGCAGTGGAGAAGGTTTTAGCTGGAGCTATCAGGAGAGAAATGGCTCTTGAAGAGTTCTGTGCCAAACAAAATTCAGAAATAATGCAGCTCAAGCGTT TGGTGCAACAATACAAGCATGAAAGGGACTGCAATGCTGTAATTAGTGAAACAAAGGAGGACAAAATTCTCCGTCTTGAAGGCCTTATGGAAGGTGTTCT ACCCACAGAGGAGTTCGTGGAGGAAGAGTATGCATCACTCATTCACGAGCACAAGCTTCTCAAGGAAAAATACGATAACCATCCTGAAGTCTTAAGGGTG AACATTGAGCTCAAAAGAGCTCAGGAAGAGCTTGAGAACTACAGAAATTTCTGTGATCTGGGAGAAAGAGAAGTCTTGTTGGAGGAGATTCAGGACTTGA GAAACCAGTTGCAGTACTATGTAGACTCTTCATCAGCAGCCTCTAATAAAAGGAGAGCTTTGTTGCAGCTGACCTATTTGAATGAACAACCTGCTTTGGC TCCCCCAGACCTTGACACAATTCCTGAGTCAACTGAGGATGGCGCTGAAGAGAAACTTGAGCAGGAGAGGTTGCGCTGGACTGAAGCCGAGAGCAAGTGG ATCTCGCTTGCCGAGGAACTGAGGGCTGAGCTTGATGCTACGAGAAATTTAGCCGACAAACAAGCAAAGGAATTAGAGATAGAGAAGAAGTGTGCAGAAG AGTTGAAGAAAGACATGCAAATGGCCATTGAAGGCCAGACACGCATGCTCGAACAACATGCAGATCTGGAAGTGAAGCATATTCAGCTACTTGCAAGGCA CAGGAAGATTCGGGAAGGAATCGAAGATGTAAAGAAAGCAGCAGCTAGGACAGGGGTGAAGGGTGCCGAGTCCAGGTTCATCAATTCCCTGGCTGCGGAA ATTTCAGCATTGAGGGTTGAAAAGGAGAAAGAGCGGCGATACTACAGGGAAGAAATCAGAGCGCTCGAGGCTCAACTGAGAGATACAGCACACGCTGTAC AATCAGCCGGCGAGTTACTGGTCAGACTCACAGAAGCAGAACAAGCTGTTGCTGTTGCCCAGGAACGGGCACTGCGGGCGGAGGTGGAATCTGGAAATGC GCGGAAGAAGGTTGAGAAGTTGAAGAGGAAGCACGAAGAAGAGATTGCAACGCTGAAGATGGTGATGGGGGAGTCGCGGCTGCCTAAAGAGGCTATACNN NNNNNNNNNNNNCCACCACCGGCAGTATGGTCGCCGCCGGCAGCAGCAGCAGCATCAACAGGTTATGAAGAAGTCTTGACGGCGAAATACGATGAAGGTG AAGGAGAAGAGTGGAGGAGAGGGGAGGAGATGGATGCGTCGTCGTGGTTTTCAGGGTATGATCGTTGCAATATATGA
AA sequence Show only first row Show all	>Lus10021969 pacid=23157977 polypeptide=Lus10021969 locus=Lus10021969.g ID=Lus10021969.BGIv1.0 annot-version=v1.0 MKHFMLPRNPVLREPNSDSPTPPPPYSLKSKPNLSPSPSIPSRRHKFSNENAPPPSDLHSSPSPAPKIRTNLPPKPPTSNPLKRKLAMDAAQDSSPHDSG VQVIVRMRPLGKDDEGDLTVQKLSNDSLCINGHNFRFDSVADIEATQQEIFQLIGAPLVENCLAGFNSSVFAYGQTGSGKTYTIWGPSNVMSEIGSSSDQ QGLTPREQVKHADRQLKYQCRCSFLEIYNEQIADLLDPSQGNLQIREDVKSGVYVENLTEEYVFTLKDVNRLLIKGLSNRRTGATSVNAESSRSHSVFTC IVESRCKSMSDGISSLKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSKLTFLLQESLGGNAKLAMVCA ISPAQSCKSETFSTLRFAQRAKAIKNKAVVNEEMEDDVNHLRGVIQQLRDELQRVKANKTNPTGWDPHKSLNILKSLMHPHSLLTKLDEDGDEEMEIDEE AVEKFCAASEDQALKNSRRVMEQGAEDTDVDMEEGTPEKVEDMDIIIGGNTTKRVRASTDQLAASIHRGLEILDSHPRSSAFRRSAFRFSYVPAENKPSP IIEKLDVGVQTISKEDDLLDFICKICKGKAELEQFDGIDESSNLPLVPVEDSGSEEKSTMQVPKTVENVLELNGTDDNSNLQLVPVDGSGSAEKSKMQVP KAVEKVLAGAIRREMALEEFCAKQNSEIMQLKRLVQQYKHERDCNAVISETKEDKILRLEGLMEGVLPTEEFVEEEYASLIHEHKLLKEKYDNHPEVLRV NIELKRAQEELENYRNFCDLGEREVLLEEIQDLRNQLQYYVDSSSAASNKRRALLQLTYLNEQPALAPPDLDTIPESTEDGAEEKLEQERLRWTEAESKW ISLAEELRAELDATRNLADKQAKELEIEKKCAEELKKDMQMAIEGQTRMLEQHADLEVKHIQLLARHRKIREGIEDVKKAAARTGVKGAESRFINSLAAE ISALRVEKEKERRYYREEIRALEAQLRDTAHAVQSAGELLVRLTEAEQAVAVAQERALRAEVESGNARKKVEKLKRKHEEEIATLKMVMGESRLPKEAIX XXXXPPPAVWSPPAAAAASTGYEEVLTAKYDEGEGEEWRRGEEMDASSWFSGYDRCNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10021969 [exp]	0	1
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	1.0	0.9446
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	10.5	0.9001
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	13.1	0.9260
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	14.5	0.9226
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10020755 [exp]	15.4	0.9072
AT4G02800			unknown protein		Lus10000658 [exp]	17.4	0.9260
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	18.0	0.9252
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	23.9	0.8870
AT3G15550			unknown protein		Lus10025757 [exp]	24.1	0.9214
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	25.6	0.9064

Compare expression of checked genes

Lus10021969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.