Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42390 1045 / 0 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) AT5G56730 100 / 2e-21 Insulinase (Peptidase family M16) protein (.1) AT2G41790 50 / 6e-06 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 50 / 9e-06 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3) AT1G06900 44 / 0.0004 Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041263 [exp] 1549 / 0 AT5G42390 1789 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10012918 [exp] 100 / 3e-21 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1) Lus10042213 [exp] 49 / 3e-05 AT1G06900 1311 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10018072 [exp] 47 / 5e-05 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235700 [exp] 1170 / 0 AT5G42390 1822 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 1167 / 0 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.006G050700 [exp] 53 / 9e-07 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.013G154600 [exp] 47 / 8e-05 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10021970 pacid=23157999 polypeptide=Lus10021970 locus=Lus10021970.g ID=Lus10021970.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCAAGTCCAACTGCTGCTTCCACCTTCCTGCCGATGATTGCTCCTGGTAGTGTCAGTGCGAGGGATGGCAGTTTCCTTAGGAACAAGGGCC CCATACAGCCTCCTCGTCAATTGCCCAGGCTGCTCCGCCGCACACCTTTGACCCGATTCCATGCCAATTCTCATTCAGTCTTTTCTCCCAGAAGGTTGAC AAATGATGTTGGTGATGGGGGTGGCAGCTCGTATAGAAAGAAGATTAAGGCACGCAGACATTATAGTTCCTTTCGAGGGCAACAAATGGTTGAGGCTTCT TTTCCCAAACCATGCACATCTTGTTCCATGAGATACCGACAAAGCCATCGTACATTTAACAAATATGCACCAGGAGCCTTCCATGACAAGTCTGGTTTTC GTCTTCCTCGTCATTCACTTGATCGTGCTTCATGCCTTCATGTTCCCTGTGCTTCTGTGGGTCCTAATGAGCCACATGCTGCGAGTACAGCCTGTCCTGA TGGAGTCCTGGAGAGGCAAGATGCAGATATGCTATTCTCTGAAATAGATAGGATTGGTTTGACTGAGTTCTTAAGTTCTGAACTTCAGTCTCACCCAAAG CTATATCGAGGGCAGTTGAAAAACGGGCTCCGCTATCTTATCTTACCTAATAAAGTCCCACCAAACAGGTTTGAAGCACACATGGAAGTACATGTAGGGT CTATAGATGAGGAAGAAGATGAGCAGGGAATTGCACATATGATTGAACATGTTGCATTCCTTGGTAGCAAGAAACGCGAGAAACTTCTTGGAACTGGTGC TCGATCTAATGCTTACACTGATTTCCATCATACAGTCTTCCACATCCATTCACCGGCAACTAATAAGGCAGCTGACGGAGATCACCTACCATCTGTTCTG GATGCCTTAAATGAGATCGCCTTTCATCCAAAATTCCTTGCCTCTCGAGTTGAAAAAGAACGGCGTGCTATACTTTCAGAACTACAAATGATGAATACAA TAGAGTACCGTGTTGATTGTCAGCTATTGCAGCATCTGCATTCTGAAAACAAGCTGAGCAAAAGGTTCCCTATTGGATTAGAAGAGCAGATTAAGAAGTG GGATGCTGACAAGATTAAGAAGTTTCATGAACGTTGGTACTACCCTGCTAATGCAACCCTATATATTGTTGGTGACATTGATGATATACCAGCGACAGTT CATCAGATTGAGACAGTGTTTGGACAAGCCGGAGAAAACTTGGTAGCACCAACACCTACCCCAAGTGCATTCAGTGCAATGGCTAATTTCCTTGTTCCAA AGCTCTCAGTTGGAATGCCCGGAAGCTCACCCCAGTCATCTACTTCGACTGATCAATCCAATACGTTGAGAACAGAAAGATATTCATCTCGGCCTCCTGT GAAGCATGATTGGTCCCTTCCTGGAAGCAAGGCATTTTTGAAGCCTCCCCAAATATTTCAACATGAGTTTCTACAAAATTTCTCAATCAACTTGTTTTGC AAGATTCCAGTAAACAAAGTTCGGACTTTTGGTGATTTGCGAAATGTTTTAATGAAGCGGATTTTTCTATCTGCATTGCATTTTAGGATCAACACACGAT ACAAGAGTTCAAATCCACCGTTTACTTCCATTGAACTGGACCATAGTGATTCTGGAAGGGAAGGTTGTACTGTTACAACTCTCACAGTTACAGCAGAACC GAAGAATTGGCAAAGTGCAATCAAAGTTGCTGTCCAAGAGGTTCGAAGGCTCAAAGAGTTTGGTGTCACCAATGGTGAACTAAATCGCTACATGAACGCC CTGTTGAAGGATAGTGAACATCTAGCTGCCATGATAGATAATGTGTCATCAGTTGATAATTTGGAGTTCATTATGGAGAGTGATGCATTGGGCCACACTG TAATGGACCAGAGACAAGGCCATGAAAGTTTGGTTGCTGTTGCTGAGACAGTTACTCTTGAAGAAGTTAATTCTGTTGGCGCTGAGGTGTTGGAATTCAT ATCTGATTACGGGAAGCCTAGTGCACCTGTACCTGCAGCTATTGTCGCTTGTGTTCCAAAGAAAGTGCACATTGAAGGAGTTGGAGAAACTGAGTTTAAG ATATCTCCTACCGAAATTACAGAAGCAATTAAGCTTGGGTTGGCGCAACCAATTGATGCGGAACCAGAGCTTGAGGTACCGAAAGAGCTAATTTCTTCAT CCGAATTGGAGGCACTGAAGTTACAACGCATGCCTTCCTTTGTTCCCTTAGATCCAACACTTAATGTTACTAGATTGCACGACTCTGAAACGGGGATCAC TCAATGCCGCCTCTCAAATGGAATAACTGTTAATTATAAGATCTCAAATTCTGAATCCCGTGGCGGCGTGATGCGACTTATTGTTGGTGGAGGGCGAGCG GAAGAAAGTTTGGATTCCAAAGGATCTGTTATTGTCGGTGTTCGAACCCTTAGTGAGGGAGGCCGTGTTGGAAACTATTCAAGAGAGCAAGTAGGTGACA ATTAG
AA sequence Show only first row Show all	>Lus10021970 pacid=23157999 polypeptide=Lus10021970 locus=Lus10021970.g ID=Lus10021970.BGIv1.0 annot-version=v1.0 MASASPTAASTFLPMIAPGSVSARDGSFLRNKGPIQPPRQLPRLLRRTPLTRFHANSHSVFSPRRLTNDVGDGGGSSYRKKIKARRHYSSFRGQQMVEAS FPKPCTSCSMRYRQSHRTFNKYAPGAFHDKSGFRLPRHSLDRASCLHVPCASVGPNEPHAASTACPDGVLERQDADMLFSEIDRIGLTEFLSSELQSHPK LYRGQLKNGLRYLILPNKVPPNRFEAHMEVHVGSIDEEEDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPATNKAADGDHLPSVL DALNEIAFHPKFLASRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIKKFHERWYYPANATLYIVGDIDDIPATV HQIETVFGQAGENLVAPTPTPSAFSAMANFLVPKLSVGMPGSSPQSSTSTDQSNTLRTERYSSRPPVKHDWSLPGSKAFLKPPQIFQHEFLQNFSINLFC KIPVNKVRTFGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSIELDHSDSGREGCTVTTLTVTAEPKNWQSAIKVAVQEVRRLKEFGVTNGELNRYMNA LLKDSEHLAAMIDNVSSVDNLEFIMESDALGHTVMDQRQGHESLVAVAETVTLEEVNSVGAEVLEFISDYGKPSAPVPAAIVACVPKKVHIEGVGETEFK ISPTEITEAIKLGLAQPIDAEPELEVPKELISSSELEALKLQRMPSFVPLDPTLNVTRLHDSETGITQCRLSNGITVNYKISNSESRGGVMRLIVGGGRA EESLDSKGSVIVGVRTLSEGGRVGNYSREQVGDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	0	1
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	1.0	0.9214
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000873 [exp]	7.5	0.8936
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	9.5	0.8916
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	12.6	0.9148
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10041413 [exp]	14.1	0.9039
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	15.5	0.8999
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	16.2	0.9092
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	17.5	0.8676
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	20.0	0.9037
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	23.2	0.8626

Compare expression of checked genes

Lus10021970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.