Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42390 621 / 0 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) AT3G05590 285 / 2e-93 RPL18 ribosomal protein L18 (.1) AT5G27850 281 / 5e-92 Ribosomal protein L18e/L15 superfamily protein (.1) AT2G47570 202 / 5e-62 Ribosomal protein L18e/L15 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041263 [exp] 783 / 0 AT5G42390 1789 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10029879 [exp] 319 / 1e-106 AT5G27850 330 / 3e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10041264 [exp] 319 / 2e-106 AT5G27850 330 / 4e-117 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10015198 [exp] 311 / 3e-103 AT3G05590 333 / 2e-118 ribosomal protein L18 (.1) Lus10031485 [exp] 316 / 1e-102 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1) Lus10020659 [exp] 317 / 2e-101 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235700 [exp] 673 / 0 AT5G42390 1822 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 665 / 0 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.002G202800 [exp] 305 / 4e-101 AT3G05590 340 / 3e-121 ribosomal protein L18 (.1) Potri.014G127300 [exp] 305 / 4e-101 AT3G05590 334 / 8e-119 ribosomal protein L18 (.1) Potri.013G013600 [exp] 300 / 2e-99 AT3G05590 337 / 8e-120 ribosomal protein L18 (.1) Potri.005G023500 [exp] 298 / 3e-98 AT3G05590 320 / 2e-113 ribosomal protein L18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10021971 pacid=23158083 polypeptide=Lus10021971 locus=Lus10021971.g ID=Lus10021971.BGIv1.0 annot-version=v1.0 ATGGAGTTCCGGTTTACACTACGAGACAATGGGATGCGGGCAGCATTTCAGTTACTGCACATGGTGCTTGAGAATAGTGTTTGGTTGGATGATGCCTTTG ATAGAGCAAGGCAATTGTATCTGTCATACTACCGGTCCATCCCCAAAAGCCTGGAACGTGCAACAGCTCACAAACTCATGACTGCCATGTTAAATGGAGA TGAACGGTTTATTGAGCCATCGCCACAATCACTACAGAATTTAACATTAGATTCTGTGAAAGAAGCTGTGATGAATCAGTTTGTTGGTGGTAACATGGAG GTGAGTATCGTGGGGGATTTTACCGAGGAGGAGATAGAATCTTCCATTATTGATTTCTTGGGCACAGTTACAGCAATGCCGGATTCTTATAGTCAGCAAG AAAGAAGTCAAGTGGTGTTTCGACCCTCGCCATCTAACTTGCTGTCCCAACAAGTGTACCTGAAGGATACAGATGAGAGGGCTTGTGCATACATTGCAGG TCCTGCACCTAATCGCTGGGGTTTAACTGTGGATGGAGAAGATCTGTTCCAGTCATTTACTGGTACAAGTGTTTCACTCGAAGGGAAGGATGCTCAGCAG GAATTGAACTCGAAGCTTCGCAGCCATCCCTTATTTTTTGGCATTACAATGGGCTTACTGGCTGAGATCATAAATTCAAGGCTTTTTACTACAGTTAGGG ACTCTCTGGGATTGACATACGACGTATCATTTGAGTTGAGCCTGTTTGATAGGCTTAACCTTGGATGGTATGTGATATCTGTCACTTCAACGCCAGGCAA GGTACACGAAGCTGTTGAAGCATGCAAAAGTGTTCTCAGAGGGCTGCATAGCAACAAAGTAGCTCCAAGGGAATTGGATAGGGCAAAACGTACTCTCCTA ATGAGACATGAAGCTGAGATCAAGTCGAATGCATATTGGCTAGGATTGATGGCCCACTTGCAAGCTTCTTCTGTCCCTAGGAAGGATATTTCATGCATTA AAGATCTCATTTGGCTATACGAAGCCGCGACCATTGAGGACATATATCTTGCCTATGAGCAGCTGAAAGTGGATGAGGATTCTCTATATTCATGCACTGG GGTTGCCGGTTCCCAGGCTGGTGAGGATATCATCGTTTCGTTGGAAGAGGAGGAAGAAGCAGTAGATGATGAGTTTGGGATTCTGGCTGTGGCGGCTCCT GCCGGTTCGCTCAGAATCGGCACTGGAAATGCACGACTGGTGCCTCCCCGGCAGACAGCCATATGTATCATCAATTTTCACTGGGGGATCGATTTGAAGG CAGGAGGTAAGAGGAAGAAGACGAAGCGTACGGCCCCGAAGTCCAATGATATCTACCTTAAACTCCTTGTGAAGCTTTACCGGTTTCTGGTGAGGAGAAC TGGAAGCAGCTTCAATGCTGTGATATTGAAAAGGCTGTTCATGAGCAAGGTCAACAAGCCGCCACTATCTCTGTCCAGGCTTATCCGCTTCACCAAGGGA AAGGAGGGCCAAATCGCAGTGGTTGTTGGAACAATCACTGATGACATCAGGGTCTATGATGTCCCCGCTATCAAAGTAACTGCCTTGAGGTTCACTGAGA CTGCTAGGGCCAGAATCGAGAAAGCTGGTGGGGAGTGCTTGACATTTGACCAGCTTGCTTTGAGGGCTCCTCTTGGCCAGAACACGGTTCTCCTCAGGGG TCCGAAGAATGCTCGTGAGGCTGTGAAGCATTTCGGCCCAGCACCTGGTGTGCCACACAGCCATAGCAAACCTTACGTTAGGTCGAAGGGAAGGAAGATT GAGAGGGCAAGAGGAAGGAGGAACAGCAGGGGATTCAGGGTTTAA
AA sequence Show only first row Show all	>Lus10021971 pacid=23158083 polypeptide=Lus10021971 locus=Lus10021971.g ID=Lus10021971.BGIv1.0 annot-version=v1.0 MEFRFTLRDNGMRAAFQLLHMVLENSVWLDDAFDRARQLYLSYYRSIPKSLERATAHKLMTAMLNGDERFIEPSPQSLQNLTLDSVKEAVMNQFVGGNME VSIVGDFTEEEIESSIIDFLGTVTAMPDSYSQQERSQVVFRPSPSNLLSQQVYLKDTDERACAYIAGPAPNRWGLTVDGEDLFQSFTGTSVSLEGKDAQQ ELNSKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELSLFDRLNLGWYVISVTSTPGKVHEAVEACKSVLRGLHSNKVAPRELDRAKRTLL MRHEAEIKSNAYWLGLMAHLQASSVPRKDISCIKDLIWLYEAATIEDIYLAYEQLKVDEDSLYSCTGVAGSQAGEDIIVSLEEEEEAVDDEFGILAVAAP AGSLRIGTGNARLVPPRQTAICIINFHWGIDLKAGGKRKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSSFNAVILKRLFMSKVNKPPLSLSRLIRFTKG KEGQIAVVVGTITDDIRVYDVPAIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKI ERARGRRNSRGFRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	2.2	0.8314
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	4.2	0.8256
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	6.2	0.8104
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	8.7	0.7625
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	11.4	0.7890
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	12.1	0.7939
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	13.0	0.7701
AT5G10910			mraW methylase family protein ...		Lus10042729 [exp]	15.0	0.8088
AT1G28530			unknown protein		Lus10015294 [exp]	16.6	0.7893
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	17.4	0.7880

Compare expression of checked genes

Lus10021971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.