Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22700 298 / 2e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G11540 61 / 1e-10 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 45 / 3e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041265 [exp] 400 / 2e-141 AT1G22700 303 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021336 [exp] 60 / 4e-10 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 59 / 5e-10 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013661 [exp] 47 / 6e-06 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 44 / 5e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 43 / 0.0001 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10003576 [exp] 42 / 0.0002 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023748 [exp] 41 / 0.0004 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10003113 [exp] 41 / 0.0006 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114500 [exp] 347 / 5e-121 AT1G22700 321 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.019G085200 [exp] 343 / 7e-120 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G075700 [exp] 60 / 2e-10 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 59 / 5e-10 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G054800 [exp] 43 / 0.0001 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G092000 [exp] 43 / 0.0001 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 42 / 0.0002 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.010G068700 [exp] 42 / 0.0002 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.018G100700 [exp] 40 / 0.0006 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.001G473100 [exp] 40 / 0.0007 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10021972 pacid=23158033 polypeptide=Lus10021972 locus=Lus10021972.g ID=Lus10021972.BGIv1.0 annot-version=v1.0 ATGAGAAAGTTAATACTTTGGATATCTGCCCTCTCTGTTCAACAAGTTTCGTTCTTGATACCTGCACAAGCAGCAAATGCGAGTGAAAGTATCAGACCAG GTGCACTATATGATGTCGGCGAGTTATTTGAACTGGGAATCCAGCTATCGTATCTGCTATTGCTGCTGGCGCTGCTTGGTGTTGGAACGTTCTTCGTGAT TCGCCAAGTTCTTGTTCGTAGAGAACTCGATCTTTCTGCTAAGGAACTACAGGCAGTAAGGAGTGGTGATGCAAGTGCTACCGAGTTGTTTGAACTTGGA GCTGTGATGTTGAGGAGGAAGTTCTACCCTGCTGCCACCAAATATTTGCTTCAAGCGATTGAGAAATGGGATGGTGACGATCAGGATCTAGCGCAGGTGT ACAATGCACTTGGGGTGAGTTATATCCGAGACGGAAAGACAGATAAAGGTGTAGCTATGCTTGAGAAGGCAGTGAAGCTTCAGCCTGGGTATGTAACTGC ATGGAACAACCTGGGAGATGCTTACGAGAAGAAGAATGACATGAAAGGAGCCCTCAAGGCATTCGAGGAAGCGCTGTTGTTTGATCCCAATAATAAGGTG GCACGGCCACGTAGAGATGGACTTAGGGATCGTGTGCAGATGTACAAAGGCGTGCCTGTGAAATCAAAGGATCGATAA
AA sequence Show only first row Show all	>Lus10021972 pacid=23158033 polypeptide=Lus10021972 locus=Lus10021972.g ID=Lus10021972.BGIv1.0 annot-version=v1.0 MRKLILWISALSVQQVSFLIPAQAANASESIRPGALYDVGELFELGIQLSYLLLLLALLGVGTFFVIRQVLVRRELDLSAKELQAVRSGDASATELFELG AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYIRDGKTDKGVAMLEKAVKLQPGYVTAWNNLGDAYEKKNDMKGALKAFEEALLFDPNNKV ARPRRDGLRDRVQMYKGVPVKSKDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	1.0	0.9649
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	1.7	0.9450
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	2.2	0.9412
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	2.8	0.9460
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	2.8	0.9414
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	5.5	0.9363
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	5.7	0.9292
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10010340 [exp]	5.8	0.9252
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	6.3	0.9303
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	9.2	0.9335

Compare expression of checked genes

Lus10021972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.