Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 204 / 4e-56 disease resistance family protein / LRR family protein (.1) AT4G04220 170 / 1e-44 AtRLP46 receptor like protein 46 (.1) AT1G34110 153 / 1e-38 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 153 / 1e-38 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 152 / 2e-38 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 151 / 4e-38 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 150 / 6e-38 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74170 147 / 1e-36 AtRLP13 receptor like protein 13 (.1) AT4G26540 145 / 3e-36 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33050 144 / 4e-36 AtRLP26 receptor like protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029483 [exp] 324 / 1e-98 AT2G34930 484 / 1e-155 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 324 / 2e-98 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10041266 [exp] 261 / 2e-81 AT2G34930 161 / 1e-43 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 246 / 1e-71 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 233 / 6e-66 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10024737 [exp] 228 / 3e-64 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 227 / 9e-64 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 225 / 4e-63 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 223 / 4e-62 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 529 / 7e-177 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 227 / 8e-64 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 227 / 9e-64 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 226 / 1e-63 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 226 / 2e-63 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 223 / 1e-62 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 223 / 2e-62 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 212 / 9e-59 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 194 / 2e-54 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.016G120600 [exp] 186 / 1e-49 AT1G47890 441 / 7e-137 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10021973 pacid=23157985 polypeptide=Lus10021973 locus=Lus10021973.g ID=Lus10021973.BGIv1.0 annot-version=v1.0 ATGGATAGTTTGCAGAACCTTGATTTGTCTGGTAACAATTTGACAGGTAGTTTGCCTGAAACTTTAGAGGAAAATTATTGTGGCTCAAATGGCCTTTTAC CTAACTTGCTGCAATTGAGACTAAGCAGCAACCGTTTAGCTGGGAAGTTGCCAGATTGGCTGGGGAAGCTCGGTAGTATTGTAGAGTTGAGTCTGGACAA CAACTTGCTACAAGGTCAAATTCCTGCTTCTTTAGGCAACTTACAGAACTTGACGAACCTCGGGATCGGATACAATCCACTTAATGGAACTCTTCCTGAT ACCTTTGGGAAGCTATCTCAACTGGGGGTTTTAGATCTTTCTTCTAATCACTTGACAGGTTCCATCTCTGAATCACATTTCGCGACGCTCGCAAAGCTCA AGATCCTGTCTTTATCATCCAATTCACTCGGTTTCAACGTCAGTTCAAGTTGGCTACCGCGATTCCAGGCTCGAAATCTGGATCTTGGTTCATGCCAGTG TTATGAAGAGCCTGGAACTCAGAAACAAGTCAAGTTCCTGTATTTCTCAAACGCTAGCATATCAGACACCATACCAACCTGGTTGTGGGACATTTCCTCC AACCTCTCTTTGTTGAATGTTTCTTTCAATCAGCTTAGGGGCCAACTCCCGAGCCATCTGAAGATCGCTCCTTTCGCAGATGTAGATTTCAGCTCCAACC TCCTGGATGGTCCGATACCGCTTCCCAGCGAGGGGATAGAACTGCTAGACCTTTCCAAGAACAAGTTCTCAGGTCCACTCCCAGAAAACATGTTCCAAAG AATGCCAGACATTATTTTTCTGTCACTTTCAGGAAACAAGCTATTAGGAGACATTCCAACCTCGATAGGCGATTCACAGTATATTCTGGTCGTTGATCTC TCCAACAACAGCTTATCCGGATACATTCCTTCCAGCATAGGCAACTGTTCTTTCCTACAGGCATTGGACCTCAGCTACAACAATCTGACAGGGCGAATTC CAATCCCATTGGGACAACTTTCTCAGCTTCAGTCCCTTCATCTCAGTAACAACAGGCTTACAGGACCCTTGCCATCGTCTTTCCAGAATTTGACAAGCCT TGAAACCTTGGATCTTGGTGAAAACCTGTTATTAGGAAACATCCCCAGCGGCAGTACATTCAAACACCTAAGAATCCTCAGGATGAGATCAAATGAATTT TCAGGTCATATCCCACCAACTATTTCAAACATAACCACATTGCAGGTGCTTGATCTAGCAGAAAACAATCTGACAGGAAACATCCCTCCGAGTCTCGGAG AGCTCAAGGCGATGGGTAGCAACCAGTACACTAACCAGTATCTCCACTTTGGCAAGTACAGAGGCGCCTACTACGAAGAGAACTTGGTGGTGAACATCAA AGGAAACCCACTAAAGTACACTAAAACTCTGTCATTAGTCACGAGCATTGACCTGTCAAGCAACAATCTACAAGGACACCTCCCTGAAGATGTTACAAAG CTGGTAGGCTTGGTTTCGTTGAACTTGTCAAGAAACCAGATTGGTGGCAGAATCCCCGAAATGATTTTTAACATGACAGCTCTCTCGTCACTTGATCTTT CTAGCAACAGCCTGTCAGGGTCAATCCCTCTAGGAATGGACTCATTGACATCATTGGCTTACTTGAACCTGTCAAGCAACTATCTCTCTGGTGCCATCCC ATCCAGAGGCCAGATGTCAACTTTCAAACCGTCAACATTCGCCAACAACTCCGGTCTGTCCCGTGAGAGTAGGGTTTGTCCCGTGAGAGTAGTGCAGTTG GTTAGGTTATGTATTGACAATTTAAGAGGTTTTAGGTTCAAATTCAGCACATTTCAGATATGA
AA sequence Show only first row Show all	>Lus10021973 pacid=23157985 polypeptide=Lus10021973 locus=Lus10021973.g ID=Lus10021973.BGIv1.0 annot-version=v1.0 MDSLQNLDLSGNNLTGSLPETLEENYCGSNGLLPNLLQLRLSSNRLAGKLPDWLGKLGSIVELSLDNNLLQGQIPASLGNLQNLTNLGIGYNPLNGTLPD TFGKLSQLGVLDLSSNHLTGSISESHFATLAKLKILSLSSNSLGFNVSSSWLPRFQARNLDLGSCQCYEEPGTQKQVKFLYFSNASISDTIPTWLWDISS NLSLLNVSFNQLRGQLPSHLKIAPFADVDFSSNLLDGPIPLPSEGIELLDLSKNKFSGPLPENMFQRMPDIIFLSLSGNKLLGDIPTSIGDSQYILVVDL SNNSLSGYIPSSIGNCSFLQALDLSYNNLTGRIPIPLGQLSQLQSLHLSNNRLTGPLPSSFQNLTSLETLDLGENLLLGNIPSGSTFKHLRILRMRSNEF SGHIPPTISNITTLQVLDLAENNLTGNIPPSLGELKAMGSNQYTNQYLHFGKYRGAYYEENLVVNIKGNPLKYTKTLSLVTSIDLSSNNLQGHLPEDVTK LVGLVSLNLSRNQIGGRIPEMIFNMTALSSLDLSSNSLSGSIPLGMDSLTSLAYLNLSSNYLSGAIPSRGQMSTFKPSTFANNSGLSRESRVCPVRVVQL VRLCIDNLRGFRFKFSTFQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10021973 [exp]	0	1
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	3.9	0.9034
AT2G32210			unknown protein		Lus10003815 [exp]	7.6	0.9133
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	11.4	0.9058
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	12.0	0.8949
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	17.8	0.9008
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	27.7	0.8998
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	28.2	0.8811
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	35.3	0.8929
AT1G71740			unknown protein		Lus10029742 [exp]	36.1	0.8844
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10036198 [exp]	36.4	0.8583

Compare expression of checked genes

Lus10021973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.