Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56190 617 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13340 613 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 613 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G78070 495 / 6e-174 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 467 / 3e-163 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 51 / 8e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 49 / 5e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G33340 49 / 8e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT5G25150 48 / 1e-05 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041268 [exp] 907 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037252 [exp] 629 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 627 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041102 [exp] 494 / 2e-173 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 470 / 1e-163 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 57 / 2e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 54 / 3e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 54 / 3e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 53 / 4e-07 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147400 [exp] 779 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 757 / 0 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 637 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G000500 [exp] 631 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 630 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G094100 [exp] 506 / 5e-178 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G168600 [exp] 504 / 8e-178 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G147500 [exp] 195 / 6e-61 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 182 / 7e-56 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 55 / 5e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021975 pacid=23158043 polypeptide=Lus10021975 locus=Lus10021975.g ID=Lus10021975.BGIv1.0 annot-version=v1.0 ATGTCTGACCACCGCCACCAAGCCGGTGAGTTCAATTACATGGCAGAAGAGGCTGAGATGGCTGATTTCGTTGATGAAATTGATGAAGACAACTATGGTG GTGCAGCAGCTGGAGGAGGGCATGATGTTGAAATGGTAGCGGATGAATATGACATGCTTACCAAGGTGACTGATACATCTTCTGCCCAAGCCAGGATGGG AAAAGATATACAGGGTATTCCATGGGAAAGATTGAATATAACCAGAGAGAAGTACCGATTGACAAGGCTCGAACAGTATAAGAACTACGAAAATATCCCT TTGTCGGGAGAATTCGTCGACAAGGCATGCAAACCAACAGAAAAGGGTGCCAACTTCTTTGAGTTCTTCTACAATACTAGATTGGTCAAGCCCACAATTC TTCATTTTCAGCTGAGGAACTTGGTTTGGGCTAGTTCAAAGCATGATGTGTATCTGATGTCTAACTACTCGGTTATGCACTGGTCGTCACTATCTTGCAA CTTATCTGAGGTCATCAATTTTGCTGGACATATAGCACCTGATGAGAAACATTCAGGAAGCTTGCTGGAAGGTTTCACTCAAACTCAAATAAGTACCCTG GCAGTCAAAGATAATTTCTTAGTAGCTGGGGGATTCCAAGGAGAGCTAACGTGCAAGCGCTTAGATAAGCCAGGAGTTAGCTTTTGCACCCGCACTACCC ATGACGATAATGCCATTACAAACTCCATTGAAATATATGATGGTTTGAGCGGAGGAGTCCACTTCATGGCAGCCAACAATGATTGTGGTCTGAGAGAATA TGACATGGAGAAATTTCAGCTCCTGAATCATTTTCGGTTCCCATGGCCAGTGAATCATACATCAATTAGTCCTGACAGAAGGCTGGTAACTGTTGTTGGA GATAACCTGGATGGACTGCTGGTGGATTCGCAAAATGGGAAGACGGTGTCCAAAATGGCAGGCCATCTAGATTATTCATTTGCCTCCGCATGGCACCCCA ACGGGCTAGTGTTTGCAACAGGGAACCAGGATAAGACCTGCCGGGTGTGGGACATGAGGAACTTGTCATCCCCCACAGCAACTCTGAAGGGAAACTTAGG TGCAGTGAGATCAATTCGGTTTTCGTCAGATGGTGAGTACATGGTGGTGGCTGAGCCTGCAGATTTTGTGCATGTATACAGCACAAAGCTAAACTATCAG AGAAGGCAAGAGGTGGACTTCTTTGGTGAGATATCGGGAGTAGCGCTTAGCCCGGACGATGAGTCGTTATACATAGGAATATGGGACCGGACATACGCTA GTTTGCTGCAGTATAATAGACGGCATAGCTACGGGTATCTGGATTCGTTCTTGTAA
AA sequence Show only first row Show all	>Lus10021975 pacid=23158043 polypeptide=Lus10021975 locus=Lus10021975.g ID=Lus10021975.BGIv1.0 annot-version=v1.0 MSDHRHQAGEFNYMAEEAEMADFVDEIDEDNYGGAAAGGGHDVEMVADEYDMLTKVTDTSSAQARMGKDIQGIPWERLNITREKYRLTRLEQYKNYENIP LSGEFVDKACKPTEKGANFFEFFYNTRLVKPTILHFQLRNLVWASSKHDVYLMSNYSVMHWSSLSCNLSEVINFAGHIAPDEKHSGSLLEGFTQTQISTL AVKDNFLVAGGFQGELTCKRLDKPGVSFCTRTTHDDNAITNSIEIYDGLSGGVHFMAANNDCGLREYDMEKFQLLNHFRFPWPVNHTSISPDRRLVTVVG DNLDGLLVDSQNGKTVSKMAGHLDYSFASAWHPNGLVFATGNQDKTCRVWDMRNLSSPTATLKGNLGAVRSIRFSSDGEYMVVAEPADFVHVYSTKLNYQ RRQEVDFFGEISGVALSPDDESLYIGIWDRTYASLLQYNRRHSYGYLDSFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	0	1
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	1.0	0.8682
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	2.0	0.8569
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	3.0	0.8324
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	3.5	0.8223
					Lus10013070 [exp]	4.7	0.7672
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	6.6	0.7455
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	8.8	0.7628
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	10.0	0.7910
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10043482 [exp]	11.1	0.7353
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	11.8	0.7682

Compare expression of checked genes

Lus10021975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.