Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32470 86 / 5e-20 Haem oxygenase-like, multi-helical (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021977 [exp] 128 / 4e-35 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1) Lus10042514 [exp] 127 / 1e-34 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1) Lus10027948 [exp] 99 / 1e-24 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1) Lus10000819 [exp] 98 / 2e-24 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G022700 [exp] 97 / 4e-24 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1) Potri.013G049300 [exp] 88 / 6e-21 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [flax] [poplar] HO PF03070 [flax] [poplar] TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence Show only first row Show all	>Lus10021976 pacid=23160216 polypeptide=Lus10021976 locus=Lus10021976.g ID=Lus10021976.BGIv1.0 annot-version=v1.0 ATGCGCTGTTCCTCCTCCTCCTCCTTCTCCTTCTTTCTTCTTCTCTCTTCTCCCTCCTCCCCTTCCCTAAAAAACCCAGTCAAAACCCCACTCCTCTCCC TACTCTCCCATCCTTCCTCATCCTCCGCCGCCTTCAACCGATCCACCGCTCCCCCGACTCCGTTGTGGCGGCGATCTTCCTCAATCTTTCCTCCTCCTCG CACAATGGCGATCCCTCCAAAGCTCATGTCATCCACCTCCATTCTTTCCTCCGCTTCTAGTCTCGGAAACATCTCCTCCGAGCACGGTCTCGCTGCCAAG CTCTGGATCAAGTTCCGCCGCGAATTGCATTTCGCTATGTACTCTCCCTTCCTCGTCTGCCTTGCCTCCGGGAAGCTGGAGATTGACTCCTTCAGGCATT TCGTCGCTCAGGATTTCCATTTCCTTAAGGCCTTCGCTCATGCGTAA
AA sequence Show only first row Show all	>Lus10021976 pacid=23160216 polypeptide=Lus10021976 locus=Lus10021976.g ID=Lus10021976.BGIv1.0 annot-version=v1.0 MRCSSSSSFSFFLLLSSPSSPSLKNPVKTPLLSLLSHPSSSSAAFNRSTAPPTPLWRRSSSIFPPPRTMAIPPKLMSSTSILSSASSLGNISSEHGLAAK LWIKFRRELHFAMYSPFLVCLASGKLEIDSFRHFVAQDFHFLKAFAHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	0	1
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	3.0	0.7666
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	4.0	0.7648
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	7.3	0.7370
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	8.1	0.7470
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023305 [exp]	9.3	0.7688
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	10.0	0.7641
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	12.2	0.7755
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	12.4	0.7370
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	13.0	0.7397
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	14.1	0.7530

Compare expression of checked genes

Lus10021976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.