Plant FIBer expression Database

Lus10021977 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 725 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042514
[exp]
1105 / 0 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10027948
[exp]
839 / 0 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10000819
[exp]
669 / 0 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
135 / 3e-37 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G022700
[exp]
858 / 0 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1)
Potri.013G049300
[exp]
845 / 0 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence
>Lus10021977 pacid=23160208 polypeptide=Lus10021977 locus=Lus10021977.g ID=Lus10021977.BGIv1.0 annot-version=v1.0
ATGGCGATCCCTCCAAAGCTCATGTCATCCACCTCCATTCTTTCCTCCGCTTCTAGTCTCGGAAACATCTCCTCCGAGCACGGTCTCGCTGCCAAGCTCT
GGATCAAGTTCCGCCGCGAATTGCATTTCGCTATGTACTCTCCCTTCCTCGTCTGCCTTGCCTCCGGGAAGCTGGAGATTGACTCCTTCAGGCATTTCGT
CGCTCAGGATTTCCATTTCCTTAAGGCCTTCGCTCATGCGTATGAATTGGCTGAAGAGTGCGCTGATGATGATGAGGCGAAGTTAGCAATTGCTGACTTG
AGAAAAGCTGTTGTGGAGGGGCTCAAGAAGCACAATTCAGTTGTTATGGAATGGGGTATTGACCCTGCTAAAGAAGTCAGTGCAGATCCTGCTACTGTCA
AATACACAGATTTTTTGCTAGCTACAGCATCTGGAAAAGTAGAAGGTGTAAAAGGTCCTGGTAAACTAGCTACTCCTTTTGAGAGAACAAAGATTGCAGC
TTACATTCTTGGTGCTGTAGCACCTTGCATGCGGCTTTATGCCTTCCTTGGTAAGGAGCTACAGGAACTTGTTGATTCAAATGATGACAGTCACCCATAT
AAGAAGTGGATTGAAGACTATTCATGTGATAAGTTTCAGGTATCAGCTTTCCAAACTGAAGATTTGCTTGAAAAACTCAGTGTCTGTTTGACGGGAGAAG
AGCTGGATGTAATTGAGAAACTTTATCACCAAGGCATGAAACATGAAACAGAGTTCTTCAACGCACAGTCACTTGGACAGCCTACAGTAGTGCCATTGAC
AAAAGTTCATAACCCTGATGAAGACCGTCTTGTGATATTTTCTGATTTTGATTTGACATGCACTGTTGTTGATTCATCTGCGATCTTAGCTGAAATTGCC
ATTGTAACTGCACCAAAGTCTGACCTGCCTCAATCTGAGAATCAAATTGTGCGGATGTCATCAGCTGAGCTGAGGAATACTTGGGGACTTATCTCTACTC
AATATACAGAAGAATATGAACAGTGCATTGAAAGCATCTTACCTCCTGAAAAAGTCGAGTTCAACTTTGAAGCTCTTTGCAAAGCACTTGAGCAACTTTC
AGTCTTTGAAAGAAGAGCAAATTCTAGAGTCATTGAGTCTGGAGTTCTCAAAGGTTTGAATCTTGAAGACATAAAACGAGCAGGCGAGAGACTACTTCTT
CAAGATGGCTGCAGTAGTTTCTTCCAGAAAATTGCAGGGAACGAGAAACTGAATTTGAAAGTCAATGTGCTCTCATATTGTTGGTGTGCAGATCTCATCA
GATCAGCCTTCTCATCAGGGGGTTTGGGTGATGTCAGCATAAACGCAAATGAGCTGACCTTTGAAGAGTCGATCTCAACAGGAGAAATCATCAACAATCT
GGAGTCTCCAATGGACAAAGCTGAAGCTTTCCGCAGCATATTGAAGAGCTACGGAGATGATAAGAGGAACTTTACAGTGTACATTGGGGATTCGGTGGGT
GACCTGCTCTGCCTGCTGCAGGCTGACGTGGGAATCGTAATTGGATCTAGCTCAAGCTTGAGGAAGATAGGGAGCCAGTATGGTGTTTCTTTTGTGCCAC
TGTTCTCTGGGGTGCTGCAGAAGCAGAAGGAATGTGTTGAAGGAAGTTGCTCGATGGGAAAGAGCCTGTCTGGCACTCTGTACACGGTTTCTAGCTGGGC
CGAGATACATGCCCTCATTTTGGGATGGTAG
AA sequence
>Lus10021977 pacid=23160208 polypeptide=Lus10021977 locus=Lus10021977.g ID=Lus10021977.BGIv1.0 annot-version=v1.0
MAIPPKLMSSTSILSSASSLGNISSEHGLAAKLWIKFRRELHFAMYSPFLVCLASGKLEIDSFRHFVAQDFHFLKAFAHAYELAEECADDDEAKLAIADL
RKAVVEGLKKHNSVVMEWGIDPAKEVSADPATVKYTDFLLATASGKVEGVKGPGKLATPFERTKIAAYILGAVAPCMRLYAFLGKELQELVDSNDDSHPY
KKWIEDYSCDKFQVSAFQTEDLLEKLSVCLTGEELDVIEKLYHQGMKHETEFFNAQSLGQPTVVPLTKVHNPDEDRLVIFSDFDLTCTVVDSSAILAEIA
IVTAPKSDLPQSENQIVRMSSAELRNTWGLISTQYTEEYEQCIESILPPEKVEFNFEALCKALEQLSVFERRANSRVIESGVLKGLNLEDIKRAGERLLL
QDGCSSFFQKIAGNEKLNLKVNVLSYCWCADLIRSAFSSGGLGDVSINANELTFEESISTGEIINNLESPMDKAEAFRSILKSYGDDKRNFTVYIGDSVG
DLLCLLQADVGIVIGSSSSLRKIGSQYGVSFVPLFSGVLQKQKECVEGSCSMGKSLSGTLYTVSSWAEIHALILGW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G32470 Haem oxygenase-like, multi-hel... Lus10021977
[exp]
0 1
AT2G47160 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- t... Lus10043101
[exp]
2.2 0.8058
AT5G32470 Haem oxygenase-like, multi-hel... Lus10042514
[exp]
2.8 0.7613
AT4G02460 PMS1 POSTMEIOTIC SEGREGATION 1, DNA... Lus10007866
[exp]
4.2 0.7258
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Lus10023472
[exp]
6.0 0.7320
AT4G27080 ATPDI7, ATPDIL5... ARABIDOPSIS THALIANA PROTEIN D... Lus10040029
[exp]
6.7 0.7050
AT5G32470 Haem oxygenase-like, multi-hel... Lus10021976
[exp]
7.3 0.7370
AT1G05280 Protein of unknown function (D... Lus10027153
[exp]
8.9 0.6815
AT1G65090 unknown protein Lus10009554
[exp]
17.3 0.6959
AT4G19900 alpha 1,4-glycosyltransferase ... Lus10017137
[exp]
19.5 0.6670
AT2G02860 ATSUT2, ATSUC3,... ARABIDOPSIS THALIANA SUCROSE T... Lus10030492
[exp]
21.9 0.7061

Lus10021977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.