Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28510 423 / 1e-150 ATPHB1 prohibitin 1 (.1) AT1G03860 420 / 1e-149 ATPHB2 prohibitin 2 (.1.2.3) AT2G20530 417 / 3e-148 ATPHB6 prohibitin 6 (.1.2) AT5G44140 398 / 8e-141 ATPHB7 prohibitin 7 (.1) AT3G27280 273 / 2e-91 ATPHB4 prohibitin 4 (.1.2) AT5G40770 271 / 9e-91 ATPHB3 prohibitin 3 (.1) AT5G14300 216 / 7e-70 ATPHB5 prohibitin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042515 [exp] 530 / 0 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10019161 [exp] 468 / 2e-168 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10034395 [exp] 463 / 1e-166 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10032072 [exp] 263 / 1e-87 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 263 / 2e-87 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10035521 [exp] 160 / 1e-47 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 129 / 2e-36 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134700 [exp] 466 / 2e-167 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 431 / 6e-154 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.017G065800 [exp] 273 / 7e-92 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.001G335700 [exp] 271 / 6e-91 AT5G40770 429 / 3e-153 prohibitin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10021978 pacid=23160233 polypeptide=Lus10021978 locus=Lus10021978.g ID=Lus10021978.BGIv1.0 annot-version=v1.0 ATGGATCCGAAGAAGGGCAAGCCTCTTTCTCAAGCCCAAGCTGGATCTAGCATAGTCAAGATCGGAGCACTCGCCGGATTAGCTATCTACGCCGCCGCTA ACTCCCTCTACAATGTTGACGGCGGGCACCGTGCCATTGTCTTCAACCGGATTAAGGGTGTCAAAGATAAGGTTTATCCAGAAGGAACTCATTTCCTCCT CCCCTGGTTTGAGCGCCCGATCATTTATGACGTCCGCGCTCGTCCTCATCTTGTTGAGAGTACATCTGGAAGCCGTGATCTTCAAATGGTCAAGATTGGG CTTCGAGTTCTTACTCGCCCTCAGGCTGACCAGCTACCCAAAATTTATCGTACTGTTGGTACAAATTACAATGAGAGAGTACTGCCTTCCATCATTCATG AGACATTGAAGTCGGTGGTTGCTCGGTACAATGCCAGCCAGCTCATTACTCAAAGAGAGGCTGTCAGTAGAGAGATAAGGAAGATATTGACAGAGAGAGC AGCTTTCTTCAACATCGCACTTGACGATGTGTCCATAACTAACCTGACTTTCGGTAGAGAGTTCACTGCTGCTATTGAGGCGAAACAGGTGGCTGCTCAG GATGCTGAAAGGGCTAAGTTCGTTGTGGAGAAGGCTGAACAGGACAAGAGGAGTGCTATAATCAGAGCAGAGGGAGAAGCTAAGAGTGCTCAGCTGATTG GACAAGCAATTGCAAGCAATCCTGCTTTCATAACACTAAGGAAGATTGAAGCTGCCAGAGATATTGCTCAGACAATGTCGGGTTCGTCAAACAAGGTGTA CCTTGACTCGAGCGATCTCCTGTTGAACCTGCACGAGATGGAAATGCAGGCCACTGGAAAGAAATGA
AA sequence Show only first row Show all	>Lus10021978 pacid=23160233 polypeptide=Lus10021978 locus=Lus10021978.g ID=Lus10021978.BGIv1.0 annot-version=v1.0 MDPKKGKPLSQAQAGSSIVKIGALAGLAIYAAANSLYNVDGGHRAIVFNRIKGVKDKVYPEGTHFLLPWFERPIIYDVRARPHLVESTSGSRDLQMVKIG LRVLTRPQADQLPKIYRTVGTNYNERVLPSIIHETLKSVVARYNASQLITQREAVSREIRKILTERAAFFNIALDDVSITNLTFGREFTAAIEAKQVAAQ DAERAKFVVEKAEQDKRSAIIRAEGEAKSAQLIGQAIASNPAFITLRKIEAARDIAQTMSGSSNKVYLDSSDLLLNLHEMEMQATGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	0	1
AT5G42960			unknown protein		Lus10007162 [exp]	3.7	0.9463
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	4.0	0.9539
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	4.1	0.9613
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	4.5	0.9558
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	6.7	0.9529
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	6.9	0.9485
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	9.0	0.9544
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	9.2	0.9467
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	9.5	0.9501
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	13.5	0.9490

Compare expression of checked genes

Lus10021978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.